View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20661_low_22 (Length: 276)
Name: NF20661_low_22
Description: NF20661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20661_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 2690276 - 2690034
Alignment:
| Q |
18 |
cttttgagcccttgaaattgacttagagggactaatactaagctaattgaaatgctaaaagctaatgttattgtgatggaatggatgtaggcatggcatc |
117 |
Q |
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| T |
2690276 |
cttttgagcccttgaaattgacttagagggactaatactaagctaattgaaatgcttaaagctaatgttattgtgatggaatggatgtaggcatggcatc |
2690177 |
T |
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| Q |
118 |
tatggaacgatcagagagcaatggaaattgtcgatgctttcattcatgatttgagtcccaacactgaggctttgagatgcatacaaatagggatgttatg |
217 |
Q |
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| T |
2690176 |
tatggaacgatcagagagcaatggaaattgtggatgcttgcattcatgatttgagtcccaacactgaggctttgagatgcatacaaatagggatgttatg |
2690077 |
T |
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| Q |
218 |
tgtgcaagattcagcatctcatagaccaaacatgtccgatatt |
260 |
Q |
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| T |
2690076 |
tgtgcaagattcagcatctcatagaccaaacatgtccgatatt |
2690034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 2698079 - 2697846
Alignment:
| Q |
18 |
cttttgagcccttgaaattgacttagagggactaatactaagctaattgaaatgctaaaagctaatgttattgtgatggaatggatgtaggcatggcatc |
117 |
Q |
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| T |
2698079 |
cttttgagttcttgaaatt--cttagaggaattaatactaagctaatcgaaatgctaaaagctaatgtt-ttgtgatgaaatggatgcaggcatggaatc |
2697983 |
T |
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| Q |
118 |
tatggaacgatcagagagcaatggaaattgtcgatgctttcattcatgatttgagtcccaacactgaggctttgagatgcatacaaatagggatgttatg |
217 |
Q |
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| T |
2697982 |
tttggaatgaacgcagagcaatggaacttcttgatccttgcattcgtgattcgagtcctacgaacaaagctttgagatgtatacaaatagggatgttatg |
2697883 |
T |
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| Q |
218 |
tgtgcaagattcagcatctcatagaccaaacatgtcc |
254 |
Q |
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| T |
2697882 |
tgtgcaagattcagcatctcatagaccaaatatgtcc |
2697846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 186 - 254
Target Start/End: Original strand, 36291110 - 36291178
Alignment:
| Q |
186 |
gctttgagatgcatacaaatagggatgttatgtgtgcaagattcagcatctcatagaccaaacatgtcc |
254 |
Q |
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| T |
36291110 |
gctttgagatgcatccacatagggatgttatgtgtgcaagattcagcatctcatagaccaaacatgtcc |
36291178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 94 - 256
Target Start/End: Complemental strand, 14519371 - 14519206
Alignment:
| Q |
94 |
tggaatggatgtaggcatggcatctatggaacgatcagagagcaatggaaattgtcgatgctttcattcatgatttgagtcccaacactgaggctttga- |
192 |
Q |
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| T |
14519371 |
tggaatggttctaggcatggcatctatggaatacaaagagatcaaaggaacttgtcgatgcttgcattagtgatttgactcccaataacgatgttattaa |
14519272 |
T |
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| Q |
193 |
--gatgcatacaaatagggatgttatgtgtgcaagattcagcatctcatagaccaaacatgtccga |
256 |
Q |
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| T |
14519271 |
tcgatgcatacaaatagggatgttatgtgtgcaagatttagcatctcgacgaccaaagatgtccga |
14519206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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