View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20661_low_29 (Length: 252)
Name: NF20661_low_29
Description: NF20661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20661_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 19707946 - 19708179
Alignment:
| Q |
1 |
tgaaagggaataatttggtaaacataatgtttgttagattaaaattcagaaattacaaaatgtcttgggattgtggttttaataataacgataaatcttt |
100 |
Q |
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| T |
19707946 |
tgaaagggaatagtttggtaaacataat-tttgttagattaaaattcagaaattacaaaatgtcttgggattgtggttttaataataacgataaatcttt |
19708044 |
T |
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| Q |
101 |
gatgttcccctatttatcctctattttatactaagtttgttcctaaggacaaggtattcatctcagaatacataaacgtgtcccgaaacaatgatcaaac |
200 |
Q |
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| T |
19708045 |
gatgttcccctatttatcctctattttatactaagtttgttcctaaggacagggtattcatctcagaatacataaacgtgtcccgaaacaatgatcaaac |
19708144 |
T |
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| Q |
201 |
ctattttcgtggttgatcatcgcagagacactttg |
235 |
Q |
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| T |
19708145 |
ctattttcgtggttgatcatcgcagagaccctttg |
19708179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 20487605 - 20487763
Alignment:
| Q |
1 |
tgaaagggaataatttggtaaacat-aatgtttgttagattaaaattcagaaattacaaaatgtcttgggattgtggttttaataataacgataaatctt |
99 |
Q |
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| T |
20487605 |
tgaaagggaataatttggtaaagaggaatgtttgtttaattaaaattcagaaattataatgtgtcttgggattgttattttaatcataatgataaatcct |
20487704 |
T |
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| Q |
100 |
tgatgttcccctatttatcctctattttatac-taagtttgttcctaaggacaaggtatt |
158 |
Q |
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| T |
20487705 |
tctcgttcccctatctttcctctattttatacttaagttcgttcctaa-gacaaggtatt |
20487763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 3153266 - 3153342
Alignment:
| Q |
26 |
aatgtttgttagattaaaattcagaaattacaaaatgtcttgggattgtggttttaataataacgataaatctttga |
102 |
Q |
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| T |
3153266 |
aatgtttgtttgattagaatttagatgttataaagtgtcttgggattgtggtttgaatcataatgataaacctttga |
3153342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 149
Target Start/End: Original strand, 41700118 - 41700198
Alignment:
| Q |
68 |
ggattgtggttttaataataacgataaatctttgatgttcccctatttatcctctattttatactaagtttgttcctaagga |
149 |
Q |
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| T |
41700118 |
ggattgtggttctaatcataacgataaatcgttgacattcccc-atccatcctctgttgtatactaagtttgttcctaagga |
41700198 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 10520037 - 10520101
Alignment:
| Q |
37 |
gattaaaattcagaaattacaaaatgtcttgggattgtggttttaataataacgataaatctttg |
101 |
Q |
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||||||||||||||| ||| ||| |||||| | |||||||||||||| |||| |||||| ||||| |
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| T |
10520037 |
gattaaaattcagaatttataaagtgtcttagaattgtggttttaatcataaggataaacctttg |
10520101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 12522746 - 12522674
Alignment:
| Q |
26 |
aatgtttgttagattaaaattcagaaattacaaaatgtcttgggattgtggttttaataataacgataaatct |
98 |
Q |
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|||||||||| ||||||||||||||||||| ||| ||| || | |||||| |||||| ||| ||||||||| |
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| T |
12522746 |
aatgtttgtttgattaaaattcagaaattataaagtgtattaaggttgtggctttaatcatattgataaatct |
12522674 |
T |
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