View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20661_low_31 (Length: 245)

Name: NF20661_low_31
Description: NF20661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20661_low_31
NF20661_low_31
[»] chr5 (5 HSPs)
chr5 (35-104)||(30517979-30518053)
chr5 (35-104)||(30558319-30558393)
chr5 (202-242)||(30517840-30517880)
chr5 (202-242)||(30558180-30558220)
chr5 (41-74)||(37993619-37993652)
[»] chr1 (2 HSPs)
chr1 (36-74)||(15873799-15873837)
chr1 (41-74)||(9922203-9922236)
[»] chr3 (2 HSPs)
chr3 (41-74)||(54258449-54258482)
chr3 (42-74)||(53506227-53506259)


Alignment Details
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 30518053 - 30517979
Alignment:
Q  35 aaataccaaatgttagtatgtaaattgttatgttagtttta-----tttaacaatgttattcttaaaatgtcttt 104  Q
    ||||||||| |||| |||| |||||||||||||||||||||     |||||||||||||||||||||||||||||    
T  30518053 aaataccaattgttggtatataaattgttatgttagttttactttatttaacaatgttattcttaaaatgtcttt 30517979  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 30558393 - 30558319
Alignment:
Q  35 aaataccaaatgttagtatgtaaattgttatgttagtttta-----tttaacaatgttattcttaaaatgtcttt 104  Q
    ||||||||| |||| |||| |||||||||||||||||||||     |||||||||||||||||||||||||||||    
T  30558393 aaataccaattgttggtatataaattgttatgttagttttactttatttaacaatgttattcttaaaatgtcttt 30558319  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 30517880 - 30517840
Alignment:
Q  202 ggttctccaaaagttttacattgctacttttggtctctgct 242  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30517880 ggttctccaaaagttttacattgctacttttggtctctgct 30517840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 30558220 - 30558180
Alignment:
Q  202 ggttctccaaaagttttacattgctacttttggtctctgct 242  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30558220 ggttctccaaaagttttacattgctacttttggtctctgct 30558180  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 37993652 - 37993619
Alignment:
Q  41 caaatgttagtatgtaaattgttatgttagtttt 74  Q
    ||||||||||||||| ||||||||||||||||||    
T  37993652 caaatgttagtatgttaattgttatgttagtttt 37993619  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 15873837 - 15873799
Alignment:
Q  36 aataccaaatgttagtatgtaaattgttatgttagtttt 74  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  15873837 aataacaaatgttagtatgttaattgttatgttagtttt 15873799  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 9922236 - 9922203
Alignment:
Q  41 caaatgttagtatgtaaattgttatgttagtttt 74  Q
    ||||||||||||||| ||||||||||||||||||    
T  9922236 caaatgttagtatgttaattgttatgttagtttt 9922203  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 54258482 - 54258449
Alignment:
Q  41 caaatgttagtatgtaaattgttatgttagtttt 74  Q
    ||||||||||||||| ||||||||||||||||||    
T  54258482 caaatgttagtatgttaattgttatgttagtttt 54258449  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 53506259 - 53506227
Alignment:
Q  42 aaatgttagtatgtaaattgttatgttagtttt 74  Q
    |||||||||||||| ||||||||||||||||||    
T  53506259 aaatgttagtatgttaattgttatgttagtttt 53506227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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