View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20661_low_33 (Length: 239)
Name: NF20661_low_33
Description: NF20661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20661_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 31799211 - 31799418
Alignment:
| Q |
15 |
aatattgttagtccataaagttaatactaagggatatcccgtgctaattgagcattaagaatgatcaactaatatttatattataacttacattaacgaa |
114 |
Q |
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| T |
31799211 |
aatattgatagtccataaagttaatactaagggatatcccgtgctaattgagcattaagaatgatcaactaatatttatattataacttacattaacgaa |
31799310 |
T |
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| Q |
115 |
gcagtcatgaaaatgcaagcgtagaagagatgctccaatgcgtttttccctaagaattgcatggagaacaactgactttatggttggtaatgcttgaggg |
214 |
Q |
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| T |
31799311 |
gcagtcatgaaaatgcaagcgtagaagagatgctccaatgcgtttttccctaagaattgcatggagaacaactgactttatggttggtaatgcttgaggg |
31799410 |
T |
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| Q |
215 |
caaacatt |
222 |
Q |
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| T |
31799411 |
caaacatt |
31799418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 157
Target Start/End: Original strand, 31768573 - 31768632
Alignment:
| Q |
98 |
taacttacattaacgaagcagtcatgaaaatgcaagcgtagaagagatgctccaatgcgt |
157 |
Q |
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| T |
31768573 |
taacttacattaacaaagcagtcatggaaatgcaaacgtagcaatgatgctcccatgcgt |
31768632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 138
Target Start/End: Original strand, 10062027 - 10062064
Alignment:
| Q |
101 |
cttacattaacgaagcagtcatgaaaatgcaagcgtag |
138 |
Q |
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| T |
10062027 |
cttacattaacaaagcaatcatgaaaatgcaagcgtag |
10062064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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