View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20661_low_5 (Length: 514)
Name: NF20661_low_5
Description: NF20661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20661_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 13 - 403
Target Start/End: Complemental strand, 35956975 - 35956594
Alignment:
| Q |
13 |
agacaaggaacggtgtctgtaactggttacaaagttgcaaatttcaattttgtcaaatcaagcaagcactttagtagtcttagctttagatgttaaaaat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35956975 |
agacaaggaacggtgtctgtaactggttacaaagttgcaaatttcaattttgtcaaatcaagcaagcactttagtagtcttagctttagatgttaaaaat |
35956876 |
T |
|
| Q |
113 |
cagaccgagtagaaataaaaggcactcatgtgaccattataatcacaagctataactttctttaagggatgctgtcaatgctgtcaatgcagagagaaag |
212 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35956875 |
cagaccgagtagaaataaaaggcactcatgtcaccattataatcacaagctataactttctttaagggatgctgtcaatgc---------agagagaaag |
35956785 |
T |
|
| Q |
213 |
aaataatatcttttacactgatgtttttacagaggaacggcaatcatccaaagtagctgaagatgtcgagtttatgctcttatcatcaactagttttaaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35956784 |
aaataatatcttttacactgatgtttttacagaggaacagcaatcatccaaagtaactgaagacgtcgagtttatgctcttatcatcaactagttttaaa |
35956685 |
T |
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| Q |
313 |
tcggatgtaaagaatagagagtgattaagaaagtttcaactagagagaaaaagaatactccaaaaaatgtatttcattgtagtaggcagga |
403 |
Q |
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| T |
35956684 |
tcggatgtaaagaatagagagtgattaagaaagtttcaactagagagaaaaagaatactccaaaaaatgtatttcattgtagtaggcagga |
35956594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 412 - 501
Target Start/End: Complemental strand, 35956529 - 35956440
Alignment:
| Q |
412 |
cctaattaaactaaaaacaagtcagctactccatgttttgagacacattcaacaactcaccctattcctgatcagcatgattcctacatg |
501 |
Q |
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| T |
35956529 |
cctaattaaactaaaaacaagtcagctactccatgttttgagacacatacaacaactcaccctattcctgatcagcatgattcctacatg |
35956440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 13 - 403
Target Start/End: Complemental strand, 33905552 - 33905178
Alignment:
| Q |
13 |
agacaaggaacggtgtctgtaactggttacaaagttgcaaatttcaattttgtcaaatcaagcaagcactttagtagtcttagctttagatgttaaaaat |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33905552 |
agacaaggaacggtgtctgtaactggttacaaagttgcaaatttcaattttgtcaaatcaagcaagcactttagtagtcttagctttagatgttaaaaat |
33905453 |
T |
|
| Q |
113 |
cagaccgagtagaaataaaaggcactcatgtgaccattataatcacaagctataactttctttaagggatgctgtcaatgctgtcaatgcagagagaaag |
212 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
33905452 |
cagaccgagtagaaataaaaggcactcatgtcaccattataatcacaagctataactttctttaagggacgctgtcaatg--------------agaaag |
33905367 |
T |
|
| Q |
213 |
aaataatatcttttacactgatgtttttacagaggaacggcaatcatccaaagtagctgaagatgtcgagtttatgctcttatcatcaactagttttaaa |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
33905366 |
aaataatatcttttacactgatgtttttacagaggaacggcaatcatccaaagtaactgaagacgtcgagtttatgctcttatcatcgactagttttaaa |
33905267 |
T |
|
| Q |
313 |
tcggatgtaaagaatagagagtgattaagaaagtttcaactagagagaaaaagaatactccaaaaaatgtatttcattgtagtaggcagga |
403 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33905266 |
tcggatgtaaagaat--agagtgattaagaaagtttcaactagagagaaaaagaatactccaaaaaatgtatttcattgtagtaggcagga |
33905178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 412 - 501
Target Start/End: Complemental strand, 33905112 - 33905023
Alignment:
| Q |
412 |
cctaattaaactaaaaacaagtcagctactccatgttttgagacacattcaacaactcaccctattcctgatcagcatgattcctacatg |
501 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33905112 |
cctaattaaactaaaaacaagtcagctactccatgttttgagacacatacaacaactcaccctattcctgatcagcatgattcctacatg |
33905023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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