View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20661_low_7 (Length: 440)

Name: NF20661_low_7

Description: NF20661

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF20661_low_7

[»] chr3 (5 HSPs)

Alignment Details

Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 5)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 305; E-Value: 1e-171

Query Start/End: Original strand, 108 - 440

Target Start/End: Complemental strand, 36808790 - 36808458

Alignment:

Q	108	tcacaatatgattataatcatacaaacattttcatttaataaatttctcgataatacctcatgtcaacttacttaaaaaattataaggaacaactataca	207	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36808790	tcacaatatgattataatcatacaaacattttcatttaataaatttctcgataatacctcatgtcaacttacttcaaaaattataaggaacaactataca	36808691	T

Q	208	aatattttaaagtaaataaaatttctcaaatcaccaaaacttgtgcaagccagtatatgatttcaaaatataaataccatgtaatggacaaaggttttca	307	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36808690	aatattttaaagtaaataaaatttctcaaatcaccaaaacttgtgcaagccagtatatgatttcaaaatataaataccatgtaatggacaaaggttttca	36808591	T

Q	308	tgtaaatcaaaatcttttccaaagctaaattcaccatcaatnnnnnnnnttgcaattcaattttgttcactcctagcagttagatagatgcgtacactta	407	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36808590	tgtaaatcaaaatcttttccaaagctaaattcaccatcaataaaaaaaattgcaattcaattttgttcactcctagcagttagatagatgcgtacactta	36808491	T

Q	408	ggttgtgagacttctccttatatatttgaattt	440	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36808490	ggttgtgagacttctccttatatatttgaattt	36808458	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2

Raw Score: 91; E-Value: 6e-44

Query Start/End: Original strand, 20 - 110

Target Start/End: Complemental strand, 36808901 - 36808811

Alignment:

Q	20	gaagcaaccacaatatcatacatctagccatagccattttgattctcaatcaactttcatcccaaaataaccattcaaatgcgatctttca	110	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36808901	gaagcaaccacaatatcatacatctagccatagccattttgattctcaatcaactttcatcccaaaataaccattcaaatgcgatctttca	36808811	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3

Raw Score: 60; E-Value: 2e-25

Query Start/End: Original strand, 220 - 299

Target Start/End: Original strand, 36511377 - 36511456

Alignment:

Q	220	taaataaaatttctcaaatcaccaaaacttgtgcaagccagtatatgatttcaaaatataaataccatgtaatggacaaa	299	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36511377	taaataaaatttctcaaatcaccaaaacttgtgcatgtcaacatgtgatttcaaaatataaataccatgtaatggacaaa	36511456	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4

Raw Score: 45; E-Value: 2e-16

Query Start/End: Original strand, 388 - 440

Target Start/End: Original strand, 36512295 - 36512347

Alignment:

Q	388	tagatagatgcgtacacttaggttgtgagacttctccttatatatttgaattt	440	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	36512295	tagatagatgcgtacacttaggttgcgagacttctccttatagatttgaattt	36512347	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5

Raw Score: 40; E-Value: 0.0000000000002

Query Start/End: Original strand, 118 - 177

Target Start/End: Complemental strand, 33450335 - 33450276

Alignment:

Q	118	attataatcatacaaacattttcatttaataaatttctcgataatacctcatgtcaactt	177	Q
		\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	33450335	attataatcttataaacattttcatttcataaatttctcaataaaacctcatgtcaactt	33450276	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]