View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20661_low_8 (Length: 438)
Name: NF20661_low_8
Description: NF20661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20661_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 3397254 - 3396837
Alignment:
| Q |
1 |
aaagagaaatcgacttaaagctaccatcaaaggatttatatttatgaggtagaaagttataccaaatcgcaatgatatctatcaacacatctgcaacgcc |
100 |
Q |
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|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3397254 |
aaagagaactcgacttaaagctaccatcaaagggtttatatttatgaggtagaaagttataccaaatcgcaatggtatctatcaacacatctgcaacgcc |
3397155 |
T |
|
| Q |
101 |
actttgacaacaatgagatattaaacatctcacgatttttgacaacaatcccaccatatctacctttggaagacaaacaaagtctcatctgacccaatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
3397154 |
actttgacaacaatgagatattaaacatctcacgatttttgacaacaatcccaccatatccacctttgaaagacaaacaaagtctcatctgacccaatta |
3397055 |
T |
|
| Q |
201 |
atattttattaagtccgaaaataacatcacaaaaaactcctttctaaaattgtgatctctctaaccaccttatatgatattttgtaggacataaaatgta |
300 |
Q |
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|||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3397054 |
atatttta---agtccgaaaatatcctcacaaaaaactcctttctaaaattgtgatctctctaaccaccttatatgatattttgtaggacataaaatgta |
3396958 |
T |
|
| Q |
301 |
tatatattggtaggaaattcaagtcataattgataagagtgatccacccatccatagataagtatcgatccttccaaagagaaaaacatcttttaataga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3396957 |
tatatattggtaggaaattcaagtcataattgataagagtgatccacccatccatagataagtatcgacccttccaaagagaaaaacatcttttaataga |
3396858 |
T |
|
| Q |
401 |
ttctaaataggggctcaaatt |
421 |
Q |
| |
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||||||||||||||||||||| |
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| T |
3396857 |
ttctaaataggggctcaaatt |
3396837 |
T |
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