View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20661_low_9 (Length: 438)
Name: NF20661_low_9
Description: NF20661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20661_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 15136781 - 15136359
Alignment:
| Q |
1 |
ataactaagtgaataaaatataaatagttccctctaattgcatagtaattaaaaacttgttcaaaacaacttcaattcatgttgtttggaatgaaaaata |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15136781 |
ataattaagtgaataaaatataaatagttccctctaattgcatagtaattaaaaacttgttcaaaacaacttcaattcatgttgtttggaatgaaaaata |
15136682 |
T |
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| Q |
101 |
aaacataaaacaatgagaatgacgcatgattctatttagttatttttaacaagaggcatagtctaatttagcagcatcttcttgaaattgtaagatcaaa |
200 |
Q |
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| T |
15136681 |
aaacataaaacaatgagaatgacacatgagtctatttatttatttttaacatgagacacagtctaatttagcagcctcttcttgaaattgtaagatcaaa |
15136582 |
T |
|
| Q |
201 |
cacaagc----tttttctaccgtcttcaaataggcaagtatcaccctctttcaagtaacaatccttcaaaaattcaagccaaccctgagagagtccacac |
296 |
Q |
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| T |
15136581 |
cacaagcaagctttttctaccatcttcaa-taggcaagtatcaccctctttcaagtaacaatccttcaaaaattcaagccaaccctgagagagtccacac |
15136483 |
T |
|
| Q |
297 |
ataaattatattaataagaaaaagaactttacaaagaattatattaaaaaatcgttaggtcacaatttttccattttctaaaatgaattccccaatgtac |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
15136482 |
ataaattatattaataagaaaaagaactttacaaagaattatattaaaaaatcgttaggtcacaatttttccattttctaaaatgaattctccaatgtac |
15136383 |
T |
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| Q |
397 |
cttattggtagagattgcactaaa |
420 |
Q |
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| T |
15136382 |
cttattggtagagattgcactaaa |
15136359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 12868319 - 12868257
Alignment:
| Q |
56 |
cttgttcaaaacaacttcaattcatgttgtttggaatgaaaaataaaacataaaacaatgaga |
118 |
Q |
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| T |
12868319 |
cttgttcaaaacaacttcaatccatatagttcggaatgagaaataaaacataaaacaatgaga |
12868257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 118
Target Start/End: Original strand, 12964954 - 12965025
Alignment:
| Q |
47 |
aattaaaaacttgttcaaaacaacttcaattcatgttgtttggaatgaaaaataaaacataaaacaatgaga |
118 |
Q |
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|||||||| || |||||||||| |||||| ||||| ||||||||| | ||||||||||||||||||||||| |
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| T |
12964954 |
aattaaaacattcttcaaaacaatttcaatccatgtagtttggaataagaaataaaacataaaacaatgaga |
12965025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 178 - 283
Target Start/End: Original strand, 12965048 - 12965151
Alignment:
| Q |
178 |
cttcttgaaattgtaagatcaaacacaagctttttctaccgtcttcaaataggcaagtatcaccctctttcaagtaacaatccttcaaaaattcaagcca |
277 |
Q |
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|||||||||||| || |||||| ||||||||| | ||| ||||||| ||||||||||||||||| || ||| | ||| |||||| |||||||||||| |
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| T |
12965048 |
cttcttgaaattaaaacatcaaatccaagctttt-caaccatcttcaa-taggcaagtatcacccttttccaattcacaccccttcacaaattcaagcca |
12965145 |
T |
|
| Q |
278 |
accctg |
283 |
Q |
| |
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|||||| |
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|
| T |
12965146 |
accctg |
12965151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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