View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20662_low_1 (Length: 802)
Name: NF20662_low_1
Description: NF20662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20662_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 738; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 738; E-Value: 0
Query Start/End: Original strand, 47 - 796
Target Start/End: Complemental strand, 13887839 - 13887090
Alignment:
| Q |
47 |
cagcatgcaaataatccatcttcttaatctcctcaggtttgaatcttaaagaatcattaaacacttccttattaatattaatatcctccctttgactcac |
146 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13887839 |
cagcatgcaaataacccatcttcttaatctcctcaggtttgaatcttaaagaatcattaaacacttccttattaatattaatatcctccctttgactcac |
13887740 |
T |
|
| Q |
147 |
aaccctgcaaatctcttctaatattttctcctcaacttcatgattctgattaagtaaccagaaaaaccagcttaaagcaactgaagaagtgtctctccca |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13887739 |
aaccctgcaaatctcttctaatattttctcctccacttcatgattctgattaagtaaccagaaaaaccagcttaaagcaactgaagaagtgtctctccca |
13887640 |
T |
|
| Q |
247 |
gctaatataaaacttacacatatatccctcaagaacttatctgaataagcctttccattctcatctttaagcttcataaacacagttaacaaatctgatt |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13887639 |
gctaatataaaacttacacatatatccctcaagaacttatctgaataagcctttccattctcatctttaagcttcataaacacagttaacaaatctgatt |
13887540 |
T |
|
| Q |
347 |
ttcgcttatcatcttccatatcatgttccaaagaaagttctttctttcttgcccttataacattctcagcaaattcatcaactttttgtattgattcctt |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13887539 |
ttcgcttatcatcttccatatcatgttccaaagaaagttctttctttcttgcccttataacattctcagcaaattcatcaactttttgtattgattcctt |
13887440 |
T |
|
| Q |
447 |
caactttctctccatacctaagttaagaaacctcatagccttccatacacaaactggcgcgacaaatcgaagcaaagttgcttcggttgcatcttcaaaa |
546 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13887439 |
caactttctctccatacctaagttaagaaacctcatagccttccatacacaaactggcgcgacaaatcgaagcaaagttgcttcggttgcatcttcaaaa |
13887340 |
T |
|
| Q |
547 |
gctcttgcaaaaggtatttcaggtaaatgaagttgcaaacaagaaggatcaacatcaaaagctatcatacaaacattatcaaaagttagtctcaacaaaa |
646 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13887339 |
gctcttgcaaaaggtatttcaggtaaatgaagttgcaaacaagaaggatcaacatcaaaagctatcatacaaacattatcaaaagttagtctcaacaaaa |
13887240 |
T |
|
| Q |
647 |
tatcttgaagatcgatggaaaccgatttcttcaacgatgaatctaagacaggtatgagcctattgttcacaagctcaaacaatgaatcagttgttaattt |
746 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13887239 |
tatcttgaagatcgatggaaaccgatttcttcaacgatgaatctaagacaggtatgagcctattgttcacaagctcaaacaatgaatcagttgttaattt |
13887140 |
T |
|
| Q |
747 |
cctaaactttgttgaatgaaactcgatactcgctgttttcctttgcttct |
796 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13887139 |
cctaaactttgttgaatgaaactcgatactcgctgttttcctttgtttct |
13887090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 49 - 796
Target Start/End: Original strand, 13897379 - 13898114
Alignment:
| Q |
49 |
gcatgcaaataatccatcttcttaatctcctcaggtttgaatcttaaagaatcattaaacacttccttattaatattaatatcctccctttgactcacaa |
148 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
13897379 |
gcatgcaaataatccatcttcttaatctcctcaggcttgaatctcaaagaatcattaaacacttccttattaatat------cctccctttgacacacaa |
13897472 |
T |
|
| Q |
149 |
ccctgcaaatctcttctaatattttctcctcaacttcatgattctgattaagtaaccagaaaaaccagcttaaagcaactgaagaagtgtctctcccagc |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13897473 |
ccctgcaaatctcttctaatattttctcctcaacttcatgattctgatcaaccaaccagaaaaaccagcttaaagcaactgaagaagtgtctctcccagc |
13897572 |
T |
|
| Q |
249 |
taatataaaacttacacatatatccctcaagaacttatctgaataagcctttccattctcatctttaagcttcataaacacagttaacaaatctgatttt |
348 |
Q |
| |
|
|||||| ||| ||||||| ||||||||||| |||||||||||||||| ||||||||||||||| |||||| |||| ||||||||||||||||| |||||| |
|
|
| T |
13897573 |
taatatgaaatttacacaaatatccctcaaaaacttatctgaataagactttccattctcatccttaagcctcatgaacacagttaacaaatccgatttt |
13897672 |
T |
|
| Q |
349 |
cgcttatcatcttccatatcatgttccaaagaaagttctttctttcttgcccttataacattctcagcaaattcatcaactttttgtattgattccttca |
448 |
Q |
| |
|
||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
13897673 |
tccttattgtcttc------attttgcaaagaaagttctttctttcttgcccttataacattctcagcaaattcatcaactttttgtattgatttcttga |
13897766 |
T |
|
| Q |
449 |
actttctctccatacctaagttaagaaacctcatagccttccatacacaaactggcgcgacaaatcgaagcaaagttgcttcggttgcatcttcaaaagc |
548 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||| ||||| |||||||| |||||||| |
|
|
| T |
13897767 |
gctttctttccatacctaagttaagaaacctcatagccttccatacacaaaccggcatgacaaatcgaaacaaagtagcttctgttgcatcctcaaaagc |
13897866 |
T |
|
| Q |
549 |
tcttgcaaaaggtatttcaggtaaatgaagttgcaaacaagaaggatcaacatcaaaagctatcatacaaacattatcaaaagttagtctcaacaaaata |
648 |
Q |
| |
|
| ||||| || |||||||| |||||| |||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13897867 |
tgcagcaaagggaatttcaggcaaatgaggttgtaaacaaccaggatcaacaccaaaagctatcatacaaacattatcaaaagttagtctcaacaaaata |
13897966 |
T |
|
| Q |
649 |
tcttgaagatcgatggaaaccgatttcttcaacgatgaatctaagacaggtatgagcctattgttcacaagctcaaacaatgaatcagttgttaatttcc |
748 |
Q |
| |
|
||||||||||| || | ||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||| | ||| | | ||||||| |||| |
|
|
| T |
13897967 |
tcttgaagatctattgcaacatttttcttcaatgatgattctaagacaggtatgagcctattgttcacaagctcaaaaattgacttaattgttaacttcc |
13898066 |
T |
|
| Q |
749 |
taaactttgttgaatgaaactcgatactcgctgttttcctttgcttct |
796 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
13898067 |
taaaatttgtcgaatgaaactcgatactcgctattttcctttgtttct |
13898114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 131 - 499
Target Start/End: Original strand, 7295489 - 7295853
Alignment:
| Q |
131 |
cctccctttgactcacaaccctgcaaatctcttctaatattttctcctcaacttcatgattctgattaagtaaccagaaaaaccagcttaaagcaact-- |
228 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||| |||| ||||| | ||||| ||| |||| ||| |||||||||| || || ||||||||| |
|
|
| T |
7295489 |
cctccctttgactcaccaccctgcaaatctctacta---ttttttcctccatttcattattatgatcaagcaaccagaaaagccgcctcaaagcaactaa |
7295585 |
T |
|
| Q |
229 |
-gaagaagtgtctctcccagctaatataaaacttacacatatatccctcaagaacttatctgaataagcctttccattctcatctttaagcttcataaac |
327 |
Q |
| |
|
||||||||||||||||| |||||||| ||| | | |||||||||||||| |||||||||| || | ||||||||||||| ||||| |||| ||| |
|
|
| T |
7295586 |
agaagaagtgtctctcccggctaatatgaaattcaaacatatatccctcac--acttatctgagtatgaaattccattctcatccgtaagcctcattaac |
7295683 |
T |
|
| Q |
328 |
acagttaacaaatctgattttcgcttatcatcttccatatcatgttccaaagaaagttctttctttcttgcccttataacattctcagcaaattcatcaa |
427 |
Q |
| |
|
||||||||||||| ||||||| |||||||||| | || || |||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7295684 |
acagttaacaaatttgatttttccttatcatct------taattttgcaaagaaagttccttctttcttgcccttataatattctcagcaaattcatcag |
7295777 |
T |
|
| Q |
428 |
ctttttgtattgattccttcaa--ctttctctccatacctaagttaag--aaacctcatagccttccatacacaaa |
499 |
Q |
| |
|
|||||||||||| || ||| || |||||| ||||||||||||||| |||| ||||||| ||||| ||||||| |
|
|
| T |
7295778 |
ctttttgtattgttttcttaaaagctttcttgtcatacctaagttaagaaaaacgtcatagctttccacacacaaa |
7295853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 148 - 796
Target Start/End: Original strand, 1034529 - 1035171
Alignment:
| Q |
148 |
accctgcaaatctcttctaatattttctcctcaacttcatgattctgattaagtaaccagaaaaaccagcttaaagcaactgaagaagtgtctctcccag |
247 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1034529 |
accctgcaaatttcttctaatattttctcctcaacttcatgattctgatcaaccaaccagaaaaaccagctcaaagcaactgaagaagtgtctctcccag |
1034628 |
T |
|
| Q |
248 |
ctaatataaaacttacacatatatccctcaagaacttatctgaataagcctttccattctcatctttaagcttcataaacacagttaacaaatctgattt |
347 |
Q |
| |
|
||||||||||| ||||||| ||||||||||| |||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||| ||||| |
|
|
| T |
1034629 |
ctaatataaaatttacacaaatatccctcaaaaacttatctgaataagactttccattctcatccttaagcctcataaacacagttaacaaatccgattt |
1034728 |
T |
|
| Q |
348 |
tcgcttatcatcttccatatcatgttccaaagaaagttctttctttcttgcccttataacattctcagcaaattcatcaactttttgtattgattccttc |
447 |
Q |
| |
|
| |||||| ||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
1034729 |
ttccttatcgtcttc------attttgcaaagaaagttctttctttcttgcccttataacattctcagcaaattcatcaactttttgtatggatttctta |
1034822 |
T |
|
| Q |
448 |
aactttctctccatacctaagttaagaaacctcatagccttccatacacaaactggcgcgacaaatcgaagcaaagttgcttcggttgcatcttcaaaag |
547 |
Q |
| |
|
| |||||| ||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||| |||| | ||||| |||||||| ||||||| |
|
|
| T |
1034823 |
agctttctttccatacctaagttaagaaacctcatagctttccatacacaaatcggcacgacaaatcgaaacaaaatagcttctgttgcatcctcaaaag |
1034922 |
T |
|
| Q |
548 |
ctcttgcaaaaggtatttcaggtaaatgaagttgcaaacaagaaggatcaacatcaaaagctatcatacaaacattatcaaaagttagtctcaacaaaat |
647 |
Q |
| |
|
||| |||||| || |||||||| |||||| |||| || ||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1034923 |
ctcctgcaaagggaatttcaggcaaatgaggttgtaagcaaccaggatcaacaccaaaagctatcatacaaacattatcaaaagttagtctcagcaaaat |
1035022 |
T |
|
| Q |
648 |
atcttgaagatcgatggaaaccgatttcttcaacgatgaatctaagacaggtatgagcctattgttcacaagctcaaacaatgaatcagttgttaatttc |
747 |
Q |
| |
|
|||||||||||| |||| ||| ||||||||| ||| | |||||||| ||||||||||||||||||||||||||||| | ||| ||| ||||||| || |
|
|
| T |
1035023 |
atcttgaagatctatggcaacatttttcttcaatgataattctaagactggtatgagcctattgttcacaagctcaaaaattgactcatttgttaacttt |
1035122 |
T |
|
| Q |
748 |
ctaaactttgttgaatgaaactcgatactcgctgttttcctttgcttct |
796 |
Q |
| |
|
||||| ||||| ||||||||||||||||| ||| |||||||||| |||| |
|
|
| T |
1035123 |
ctaaaatttgtcgaatgaaactcgatactagctattttcctttgtttct |
1035171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 79
Target Start/End: Original strand, 1034446 - 1034478
Alignment:
| Q |
47 |
cagcatgcaaataatccatcttcttaatctcct |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
1034446 |
cagcatgcaaataatccatcttcttaatctcct |
1034478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 6e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 139 - 791
Target Start/End: Original strand, 28666800 - 28667446
Alignment:
| Q |
139 |
tgactcacaaccctgcaaatctcttctaatattttctcctcaacttcatgattctgattaagtaaccagaaaaaccagcttaaagcaactgaagaagtgt |
238 |
Q |
| |
|
|||||||| ||| |||| |||||||||||||| |||||||| |||||||||||||||| ||||||||| |||||||| || ||||| || |||||||||| |
|
|
| T |
28666800 |
tgactcaccaccttgcatatctcttctaatatcttctcctccacttcatgattctgatcaagtaaccaaaaaaaccaactcaaagccacagaagaagtgt |
28666899 |
T |
|
| Q |
239 |
ctctcccagctaatataaaacttacacatatatccctcaagaacttatctgaataagcctttccattctcatctttaagcttcataaacacagttaacaa |
338 |
Q |
| |
|
|||||||||||| ||||||| | |||||||||||||||| ||||||||||||||||| ||||||||||||| || | ||||||||| ||||||||||| |
|
|
| T |
28666900 |
ctctcccagctagtataaaattcacacatatatccctcagaaacttatctgaataagcacttccattctcatccttcatcttcataaaaacagttaacaa |
28666999 |
T |
|
| Q |
339 |
atctgattttcgcttatcatcttccatatcatgttccaaagaaagttctttctttcttgcccttataacattctcagcaaattcatcaactttttgtatt |
438 |
Q |
| |
|
|||||| || | || | || |||| ||||||||| ||||| || ||||| | |||||| |||||| |||||||||||||| || ||| |
|
|
| T |
28667000 |
atctgacctttgtttcttttc------atcaacttccaaagatagttccttttttctagtccttatgacattcattgcaaattcatcaacccctttaatt |
28667093 |
T |
|
| Q |
439 |
gattccttcaactttctctccatacctaagttaagaaacctcatagccttccatacacaaactggcgcgacaaatcgaagcaaagttgcttcggttgcat |
538 |
Q |
| |
|
|||| ||| | ||||| || | |||||||||||||| |||||| |||||| |||| ||| || || ||||||| || ||||| ||||||| |
|
|
| T |
28667094 |
gatttcttgagttttctttctacacctaagttaagaagcctcatgaacttccaagcacacgtaggcataacgaaacgaagcacggtggcttctgttgcat |
28667193 |
T |
|
| Q |
539 |
cttcaaaagctcttgcaaaaggtatttcaggtaaatgaagttgcaaacaagaaggatcaacatcaaaagctatcatacaaacattatcaaaagttagtct |
638 |
Q |
| |
|
| ||||| ||| ||||||| ||||| ||||| | | | ||||||| |||||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28667194 |
cctcaaaggcttttgcaaatggtatctcaggaagtttttgactcaaacaaccaggatcaacaccaaaagctatcatacaaacattgtcaaaagttagtct |
28667293 |
T |
|
| Q |
639 |
caacaaaatatcttgaagatcgatggaaaccgatttcttcaac-gatgaatctaagacaggtatgagcctattgttcacaagctcaaacaatgaatcagt |
737 |
Q |
| |
|
|| | ||| ||||||||||| | || | | ||| ||||| ||| |||||| ||||||| ||||| | |||||||||||||| |||||||| |
|
|
| T |
28667294 |
taaaagaatgtcttgaagatctgt-gacagcccttttatcaactgattcatctaaaacaggtaaaagccttgaatgaacaagctcaaacaaagaatcagt |
28667392 |
T |
|
| Q |
738 |
tgttaatttcctaaactttgttgaatgaaactcgatactcgctgttttcctttg |
791 |
Q |
| |
|
|||||| || || ||||| || |||||||||||||| ||||||||||| ||||| |
|
|
| T |
28667393 |
tgttaaatttctgaacttggtcgaatgaaactcgatgctcgctgtttttctttg |
28667446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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