View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20662_low_2 (Length: 499)
Name: NF20662_low_2
Description: NF20662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20662_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 18 - 472
Target Start/End: Complemental strand, 51211484 - 51211030
Alignment:
| Q |
18 |
gttcttagcactcctctttaagcaaataaaatcaaagtttaatttaaaagatgtgtgggacaggtttcttatgcatggggctaataatgccaaaaggata |
117 |
Q |
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| T |
51211484 |
gttcttagcactcctctttaagcaaataaaatcaaagtttaatttaaaagatgtgtgggacaggtttcttatgcatggggctaataatgccaaaaggata |
51211385 |
T |
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| Q |
118 |
aaattgcagattgcccgctcaacaatttaatagttttcaattcattgataatgtgataacttggaatatattgatcgtacaacatagatgtaagcatgtc |
217 |
Q |
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| T |
51211384 |
aaattgcagattgcccgctcaacaatttaatagttttcaattcattgataatgtgataacttggaatatattgatcgtacaacatagatgtaagcatgtc |
51211285 |
T |
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| Q |
218 |
agcatactcgagggtctcacattagatagagatatggcatagatactggctgtgtgagggaaaactctcagcccatgaccatgcttttggggctgagtta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
51211284 |
agcatactcgagggtctcacattagatagagatatgacatagatactggctgtgtgagggaaaactctcagcccatgaccatgcttttggggttgagtta |
51211185 |
T |
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| Q |
318 |
gactgaaactcaagttttaatatggtatcagagcctatcatagaccagttgtgccacccacggatgttcaatcctaagaacatcatgcaccagatgtcca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51211184 |
gactgaaactcaagttttaatatggtatcagagcctatcatagacccgttgtgccacccacggatgttcaatcctaagaacatcatgcaccagatgtcca |
51211085 |
T |
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| Q |
418 |
atcataggcatcagggggtggcacactggaaatgatattgaacagtggttatatt |
472 |
Q |
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| T |
51211084 |
atcataggcatcagggggtggcacactggaaatgatattgaacagtggttatatt |
51211030 |
T |
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