View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20662_low_3 (Length: 441)

Name: NF20662_low_3
Description: NF20662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20662_low_3
NF20662_low_3
[»] chr5 (16 HSPs)
chr5 (1-208)||(1058439-1058646)
chr5 (217-422)||(1058837-1059042)
chr5 (230-421)||(1071669-1071860)
chr5 (230-421)||(1065942-1066133)
chr5 (1-185)||(1071282-1071465)
chr5 (1-195)||(1065545-1065738)
chr5 (217-421)||(1033927-1034131)
chr5 (217-421)||(1044314-1044518)
chr5 (16-144)||(1043980-1044108)
chr5 (16-142)||(1033595-1033721)
chr5 (3-144)||(1053238-1053379)
chr5 (18-128)||(1046579-1046689)
chr5 (298-421)||(1053653-1053776)
chr5 (16-141)||(1640835-1640960)
chr5 (301-416)||(1046984-1047099)
chr5 (298-417)||(1640429-1640548)
[»] chr3 (3 HSPs)
chr3 (1-142)||(44171311-44171452)
chr3 (1-142)||(44191607-44191748)
chr3 (329-390)||(12121338-12121399)
[»] scaffold0001 (1 HSPs)
scaffold0001 (307-390)||(65854-65937)


Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 1058646 - 1058439
Alignment:
Q  1 acttccaaaacaatccgacaacggttctcaagggatccaccatattcatctgttctgtcgttcacttgatctttcatgaattgctcaagtatgtagccat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1058646 acttccaaaacaatccgacaacggttctcaagggatccaccatattcatctgttctgtcgttcacttgatctttcatgaattgctcaagtatgtagccat 1058547  T
Q  101 tagccccatggatttcaaccccatcaaaccctgcaatttgcacccccaatgagtatgttacagaattgtaaaatgtcctagtgccctctaaagcaacatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  1058546 tagccccatggatttcaaccccatcaaaccctgcaatttgcacccccaatgagtatgttacagaattgtaaaatgtcctagtgccctctaaagcaaaatt 1058447  T
Q  201 gtattatg 208  Q
    ||||||||    
T  1058446 gtattatg 1058439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 217 - 422
Target Start/End: Original strand, 1058837 - 1059042
Alignment:
Q  217 attgaatgctctcacagccttgtgccgatgagaaaggccttcaaaggcactttcctggctgcaggaggttacgaccgaaatgatgggatcaatgccatag 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1058837 attgaatgctctcacagccttgtgccgatgagaaaggccttcaaaggcactttcctggctgcaggaggttacgaccgaaatgatgggatcaatgccatag 1058936  T
Q  317 ctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttgatgctcctctaaacaagtataa 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1058937 ctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttaatgctcctctaaacaagtataa 1059036  T
Q  417 cagggc 422  Q
    ||||||    
T  1059037 cagggc 1059042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 230 - 421
Target Start/End: Original strand, 1071669 - 1071860
Alignment:
Q  230 acagccttgtgccgatgagaaaggccttcaaaggcactttcctggctgcaggaggttacgaccgaaatgatgggatcaatgccatagctgaaaataggac 329  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||| |    
T  1071669 acagccttgtgccaatgagaaaggccttcaaaggcactttcatggttgcaggaggttacgaccgacatgatgggatcaatgccatagctgaaaacagggc 1071768  T
Q  330 agaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttgatgctcctctaaacaagtataacaggg 421  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1071769 agacctagttgtatatggtcgtttgttcttagctaatccagatttgccaaagagatttgcacttgatgctcctctaaacaagtataacaggg 1071860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 230 - 421
Target Start/End: Original strand, 1065942 - 1066133
Alignment:
Q  230 acagccttgtgccgatgagaaaggccttcaaaggcactttcctggctgcaggaggttacgaccgaaatgatgggatcaatgccatagctgaaaataggac 329  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||| |    
T  1065942 acagccttgtgccaatgagaaaggccttcaaaggcactttcatggttgcaggaggttacgaccgacatgatgggatcaatgccatagctgaaaacagggc 1066041  T
Q  330 agaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttgatgctcctctaaacaagtataacaggg 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||| ||||||||||    
T  1066042 agaccttgttgtatatggtcgtttgttcttagctaatccagatttaccaaagagatttgcacttgatgctcctctgaacaaatataacaggg 1066133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 1071465 - 1071282
Alignment:
Q  1 acttccaaaacaatccgacaacggttctcaagggatccaccatattcatctgttctgtcgttcacttgatctttcatgaattgctcaagtatgtagccat 100  Q
    ||||||||| ||| |||||||||||||||||||||||||||||| |||||||| ||||| ||||||| ||||||||||||||| ||||| | ||||||||    
T  1071465 acttccaaagcaaaccgacaacggttctcaagggatccaccatactcatctgtcctgtcattcactttatctttcatgaattgttcaaggaggtagccat 1071366  T
Q  101 tagccccatggatttcaaccccatcaaaccctgcaatttgcacccccaatgagtatgttacagaattgtaaaatgtcctagtgcc 185  Q
     ||| ||||||||||||||||||||||| ||||||||||| | ||||| | |||||| |||| ||||| ||||||||||||||||    
T  1071365 gagctccatggatttcaaccccatcaaatcctgcaatttgta-ccccactaagtatgatacataattggaaaatgtcctagtgcc 1071282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 1065738 - 1065545
Alignment:
Q  1 acttccaaaacaatccgacaacggttctcaagggatccaccatattcatctgttctgtcgttcacttgatctttcatgaattgctcaagtatgtagccat 100  Q
    ||||||||| |||  ||||| |||||||| || || ||||||||||||||||| ||||| ||||||| ||||||||||||||||||||| | ||||||||    
T  1065738 acttccaaagcaaatcgacagcggttctccagagacccaccatattcatctgtcctgtcattcactttatctttcatgaattgctcaaggaggtagccat 1065639  T
Q  101 tagccccatggatttcaaccccatcaaaccctgcaatttgcacccccaatgagtatgttacagaattgtaaaatgtcctagtgccctctaaagca 195  Q
     ||| ||||||||||||||||||||||| ||||||||||||  ||| | | ||||||||| | ||||||||||||||| ||||| ||||||||||    
T  1065638 gagctccatggatttcaaccccatcaaatcctgcaatttgc-gccctagtaagtatgttatataattgtaaaatgtcccagtgctctctaaagca 1065545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 217 - 421
Target Start/End: Original strand, 1033927 - 1034131
Alignment:
Q  217 attgaatgctctcacagccttgtgccgatgagaaaggccttcaaaggcactttcctggctgcaggaggttacgaccgaaatgatgggatcaatgccatag 316  Q
    |||||| || || |||| || ||||| ||||||||||| ||||| || |||||| ||| ||| |||||||| ||| || | |||||||||||||| ||||    
T  1033927 attgaaagcccttacagtctggtgcccatgagaaaggctttcaatggtactttcatggttgcgggaggttatgacagacaagatgggatcaatgctatag 1034026  T
Q  317 ctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttgatgctcctctaaacaagtataa 416  Q
    | || |||||| |||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||  | |||||||| || || |||||    
T  1034027 cagataatagggcagatcttgttgtttatggtcgtttgttcttagcgaatccagatttgccgaagagatttgcactaaacgctcctctcaataaatataa 1034126  T
Q  417 caggg 421  Q
    |||||    
T  1034127 caggg 1034131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 217 - 421
Target Start/End: Original strand, 1044314 - 1044518
Alignment:
Q  217 attgaatgctctcacagccttgtgccgatgagaaaggccttcaaaggcactttcctggctgcaggaggttacgaccgaaatgatgggatcaatgccatag 316  Q
    |||||| || || |||| || ||||| ||||||||||| ||||| ||| ||||| ||||||||||||| || ||| || | || |||||| |||| ||||    
T  1044314 attgaaagcccttacagtctggtgccaatgagaaaggctttcaatggctctttcatggctgcaggaggctatgacagacaagacgggatcgatgctatag 1044413  T
Q  317 ctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttgatgctcctctaaacaagtataa 416  Q
    ||||||| | | |||| ||||| || |||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||| |||||||||||    
T  1044414 ctgaaaacaaggcagatcttgtagtttatggtcgtttgttcttagcaaatccagatttgccaaagagatttgcacttaatgctcctctcaacaagtataa 1044513  T
Q  417 caggg 421  Q
     ||||    
T  1044514 taggg 1044518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 1044108 - 1043980
Alignment:
Q  16 cgacaacggttctcaagggatccaccatattcatctgttctgtcgttcacttgatctttcatgaattgctcaagtatgtagccattagccccatggattt 115  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||| ||||||| ||||||||||||||| ||||||| |||||||| ||| ||||||||||    
T  1044108 cgacaacgattctcgagggatccaccgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggattt 1044009  T
Q  116 caaccccatcaaaccctgcaatttgcacc 144  Q
    |||| |||||||| ||| |||||||||||    
T  1044008 caactccatcaaaaccttcaatttgcacc 1043980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 1033721 - 1033595
Alignment:
Q  16 cgacaacggttctcaagggatccaccatattcatctgttctgtcgttcacttgatctttcatgaattgctcaagtatgtagccattagccccatggattt 115  Q
    |||||||| |||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||| ||||||| |||||||| ||| ||||| | ||    
T  1033721 cgacaacgattctcaagggatccaccatattcatctgttctatcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatgaagtt 1033622  T
Q  116 caaccccatcaaaccctgcaatttgca 142  Q
    |||| |||||||| |||||||||||||    
T  1033621 caacaccatcaaaacctgcaatttgca 1033595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 3 - 144
Target Start/End: Complemental strand, 1053379 - 1053238
Alignment:
Q  3 ttccaaaacaatccgacaacggttctcaagggatccaccatattcatctgttctgtcgttcacttgatctttcatgaattgctcaagtatgtagccatta 102  Q
    |||||||||||  | |||||| || ||||||| |||||||||||||||||||||||||||  ||| ||||||||||||||| |||| || |||||||| |    
T  1053379 ttccaaaacaaatctacaacgattttcaagggttccaccatattcatctgttctgtcgtttgctttatctttcatgaattgttcaactaggtagccatga 1053280  T
Q  103 gccccatggatttcaaccccatcaaaccctgcaatttgcacc 144  Q
    || ||||||||||||||||||||||| ||| |||||||||||    
T  1053279 gctccatggatttcaaccccatcaaaacctacaatttgcacc 1053238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 1046689 - 1046579
Alignment:
Q  18 acaacggttctcaagggatccaccatattcatctgttctgtcgttcacttgatctttcatgaattgctcaagtatgtagccattagccccatggatttca 117  Q
    ||||||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||| ||| |||||||| | ||||||    
T  1046689 acaacggttttcaagagttccaccatattcatctgttctgtcattcactttatctttcatgaattgctcaagtaggtatccagtagccccacgaatttca 1046590  T
Q  118 accccatcaaa 128  Q
    |||||||||||    
T  1046589 accccatcaaa 1046579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 298 - 421
Target Start/End: Original strand, 1053653 - 1053776
Alignment:
Q  298 gatgggatcaatgccatagctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttgatg 397  Q
    ||||| |||||||| ||||||||||||||| |||| ||| |||  ||||||||||||||| || ||||||||||||| || ||||||||||||||| |||    
T  1053653 gatggaatcaatgctatagctgaaaatagggcagatcttattgcttatggtcgtttgttcatatctaatccagatttaccaaagagatttgcacttaatg 1053752  T
Q  398 ctcctctaaacaagtataacaggg 421  Q
    ||||||| ||||||||||| ||||    
T  1053753 ctcctcttaacaagtataataggg 1053776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 1640835 - 1640960
Alignment:
Q  16 cgacaacggttctcaagggatccaccatattcatctgttctgtcgttcacttgatctttcatgaattgctcaagtatgtagccattagccccatggattt 115  Q
    ||||||||||| ||||||| |||||| |||| ||| |||| ||| ||||||| ||||||||| ||||||||||||| ||| || | |||||||||||| |    
T  1640835 cgacaacggttttcaagggttccaccgtatttatcagttcggtcattcactttatctttcataaattgctcaagtaggtaaccgtgagccccatggatct 1640934  T
Q  116 caaccccatcaaaccctgcaatttgc 141  Q
    |||| |||||||| ||||||||||||    
T  1640935 caactccatcaaaacctgcaatttgc 1640960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 301 - 416
Target Start/End: Original strand, 1046984 - 1047099
Alignment:
Q  301 gggatcaatgccatagctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttgatgctc 400  Q
    ||||||||||| |||||||||||||||  ||| |||||||  || |  ||||| ||| ||||||||||||||||||| ||||||||||||||| ||||||    
T  1046984 gggatcaatgctatagctgaaaatagggtagatcttgttgcttacgaccgtttattcatagctaatccagatttgccaaagagatttgcacttaatgctc 1047083  T
Q  401 ctctaaacaagtataa 416  Q
    | ||||||||||||||    
T  1047084 ccctaaacaagtataa 1047099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 298 - 417
Target Start/End: Complemental strand, 1640548 - 1640429
Alignment:
Q  298 gatgggatcaatgccatagctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttgatg 397  Q
    ||||||||  ||||||||| |||||||| |||||| |||||||  |||||||| |||||  || ||||||||||||| || |||||||| || || ||||    
T  1640548 gatgggattgatgccatagttgaaaataagacagatcttgttgcttatggtcgcttgtttatatctaatccagatttaccaaagagattcgcgctcgatg 1640449  T
Q  398 ctcctctaaacaagtataac 417  Q
    ||||||| ||||||||||||    
T  1640448 ctcctctcaacaagtataac 1640429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 44171311 - 44171452
Alignment:
Q  1 acttccaaaacaatccgacaacggttctcaagggatccaccatattcatctgttctgtcgttcacttgatctttcatgaattgctcaagtatgtagccat 100  Q
    ||||||||  ||| || ||| |||||||| |||||||||||||||||||||||| || | ||||||| ||| ||||||||||| ||||||| ||||||||    
T  44171311 acttccaatccaaaccaacatcggttctctagggatccaccatattcatctgttttgccattcactttatccttcatgaattgttcaagtaggtagccat 44171410  T
Q  101 tagccccatggatttcaaccccatcaaaccctgcaatttgca 142  Q
     ||| ||||| ||||| || |||||||| |||||||||||||    
T  44171411 gagctccatgaatttccacaccatcaaaacctgcaatttgca 44171452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 44191607 - 44191748
Alignment:
Q  1 acttccaaaacaatccgacaacggttctcaagggatccaccatattcatctgttctgtcgttcacttgatctttcatgaattgctcaagtatgtagccat 100  Q
    ||||||||  ||| || ||| |||||||| |||||||||||||||||||||||| || | ||||||| ||| ||||||||||| ||||||| ||||||||    
T  44191607 acttccaatccaaaccaacatcggttctctagggatccaccatattcatctgttttgccattcactttatccttcatgaattgttcaagtaggtagccat 44191706  T
Q  101 tagccccatggatttcaaccccatcaaaccctgcaatttgca 142  Q
     ||| ||||| ||||| || |||||||| |||||||||||||    
T  44191707 gagctccatgaatttccacaccatcaaaacctgcaatttgca 44191748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 329 - 390
Target Start/End: Complemental strand, 12121399 - 12121338
Alignment:
Q  329 cagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgca 390  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||    
T  12121399 cagatcttgttgtttatggtcgtttgttcttagctaatccagatttgccaatgagatttgca 12121338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 307 - 390
Target Start/End: Original strand, 65854 - 65937
Alignment:
Q  307 aatgccatagctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgca 390  Q
    ||||| ||||| ||||||| | |||| |||||||| |||||||||| |||||||||||||||| ||||||| ||||||||||||    
T  65854 aatgctatagcagaaaataaggcagatcttgttgtttatggtcgttcgttcttagctaatccaaatttgccaaagagatttgca 65937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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