View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20662_low_5 (Length: 387)
Name: NF20662_low_5
Description: NF20662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20662_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 36122521 - 36122683
Alignment:
| Q |
18 |
cagaatgggattcgtgagtgcagcaaaggctggaaaacacgatatttagataatagcttacggatagggaaatagtgtttgtcacgtgagggtgtatcat |
117 |
Q |
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| T |
36122521 |
cagaatggaattcgtgagtgcagcaaaggctggaaaacacgatatttagataatagcttacggatagggaaatagtgtttgtcacgtgagggtgtatcat |
36122620 |
T |
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| Q |
118 |
gagttcacaatgaaacaagtgattttaactatttcatacaccatacccttcaccccaattgta |
180 |
Q |
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| T |
36122621 |
gagttcacaatgaaacaagtgattttaactatttcatacaccatacccttccccccaattgta |
36122683 |
T |
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Target: chr2; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 214 - 377
Target Start/End: Original strand, 36122717 - 36122880
Alignment:
| Q |
214 |
cgtttacttatataaaaaagtcgtgttttcacgtttgcgttatttatttagaattgttattgtgatatggataagggatttgatattcatggaacttgtg |
313 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36122717 |
cgtttacttatataaaaaagtcgtgttttcactttcgcgttatttatttagaattgttattgtgatatggataagggatttgatattcatggaacttgtg |
36122816 |
T |
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| Q |
314 |
tgacaataaatagttgcagtgttatatccnnnnnnncttggtgcgggaggtaagatgtcctttg |
377 |
Q |
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| T |
36122817 |
tgacaataaatagttgcagtgttatatccaaaaaaacttggtgcgggaggtaagatgtcctttg |
36122880 |
T |
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