View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20663_high_4 (Length: 574)
Name: NF20663_high_4
Description: NF20663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20663_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 17 - 557
Target Start/End: Original strand, 1703490 - 1704030
Alignment:
| Q |
17 |
actacaaaataaggaaaatgattatgcacccttaaatcaaacctacacaatgttctctgaaggtggcttgtctgttgttaattctgaagttggcttgtct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1703490 |
actacaaaataaggaaaatgattatgcacccttaaatcaaacctacacaatgttctctgaagttggcttgtctgttgttaattctgaagttggcttgtct |
1703589 |
T |
|
| Q |
117 |
gctgttgtctctgaagttggtttgtatgctgatcttagaaagttatatgcaagtgctccagctatggctccaataattggaccaactatatatatccaca |
216 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1703590 |
gctattgtctctgaagttggtttgtatgctgatcttagaaagttataggcaagtgctccagctatggctccaataattggaccaactatatatatccaca |
1703689 |
T |
|
| Q |
217 |
atcctttgtaaatatgtatcacaattgcaggaccaatacttcttgctgggttcatagatgcacctgatacaggcccagcaataaaaagattcaatgttaa |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1703690 |
atcctttgtaaatatgtatcacaattgcaggaccaatacttcttgctgggttcatagatgcacctgacacaggcccagcaataaaaagattcaatgttaa |
1703789 |
T |
|
| Q |
317 |
tgtcattccaactgcaatacttgcggagtcatcgaccgctctatcatctgtagtaacagctgaaatgacaaacattaagagaaaactgataatgatttct |
416 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1703790 |
tgtcattccaaccgcaatacttgccgagtcatcgaccgctctatcatctgtagtaacagctgaaatgacaaacattaagagaaaactgataatgatttct |
1703889 |
T |
|
| Q |
417 |
aacactaaagattgacagtttgatccgaccggtacagttccgaaataagattcgggtgtgatgtcaaacattaaagataacgttacacttgcaagtgtag |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1703890 |
aacactaaagattgacagtttgatccgaccggtacagttccgaaatatgattcgggtgtgatgtcaaacattaaagataacgttacacttgcaagtgtag |
1703989 |
T |
|
| Q |
517 |
aaccaagtaattgagcaagaatgtacaaaggagcctcttta |
557 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1703990 |
aaccaagtaattgagcaagaatgtacaaaggagcctcttta |
1704030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 147 - 291
Target Start/End: Complemental strand, 34020006 - 34019862
Alignment:
| Q |
147 |
gatcttagaaagttatatgcaagtgctccagctatggctccaataattggaccaactatatatatccacaatcctttgtaaatatgtatcacaattgcag |
246 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||| ||||||| |||||||||||| | ||||||||| | ||||||||||| ||||| | || ||||| |
|
|
| T |
34020006 |
gatctaagaaagttatatgcaattgctccagctatagctccaacaattggaccaaccacatatatccatagtcctttgtaaacatgtactataagtgcag |
34019907 |
T |
|
| Q |
247 |
gaccaatacttcttgctgggttcatagatgcacctgatacaggcc |
291 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
34019906 |
gaccaatacttcttgctgggttcatagatcctcctgatacaggcc |
34019862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 375 - 465
Target Start/End: Complemental strand, 34019577 - 34019487
Alignment:
| Q |
375 |
gctgaaatgacaaacattaagagaaaactgataatgatttctaacactaaagattgacagtttgatccgaccggtacagttccgaaataag |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |||||||| || | |||||||| || ||||| ||||| ||||||| |
|
|
| T |
34019577 |
gctgaaatgacaaacattaagagaaaactgatgatgatttctacaactaaagactggccatttgatccaactggtacggttccaaaataag |
34019487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University