View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20663_low_2 (Length: 623)
Name: NF20663_low_2
Description: NF20663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20663_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 298 - 595
Target Start/End: Complemental strand, 1703213 - 1702916
Alignment:
| Q |
298 |
ctcactattaattaattttaagtaaaaatttgtctggttatataacaaataatattttagtaaagcaaatatattattcataaattgaatgtacacgaga |
397 |
Q |
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| T |
1703213 |
ctcactattaattaaatttaagtaaaaatttgtctggttatataacaaataatattttagtaaaacaaatatatcattcaaaaattgaatgtacacgaga |
1703114 |
T |
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| Q |
398 |
ctattaaaaacaaatttaaattagtattttggtggttcttttattacaagagaaaattttattatgggactagctaaacacgcatgatatgtatagatgc |
497 |
Q |
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| T |
1703113 |
ctattaaaaacaaatttaaattagtattttggtggttcttttattacaagagaaaattttattaagggaatagctaaacacacatgatatgtatagatgc |
1703014 |
T |
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| Q |
498 |
caagagctaggaaacaaataacaatgtcccaaggtaataccaggttcgggaggttctgcaatatatgtatcgaagaaaagtctattaactcaattcaa |
595 |
Q |
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| T |
1703013 |
caagagctaggaaacaaataacaatgtcccaaggtaataccaggttcaggaggttctgcaatatatgtatagaagaaaagtctattaactcaattcaa |
1702916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 1703513 - 1703338
Alignment:
| Q |
1 |
taatcattttccttattttgtagttgagtactttgcttttgttttatggaagttgtcctaattagggttttaaactgctttggtttattaagaatgtttt |
100 |
Q |
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| T |
1703513 |
taatcattttccttattttgtagttgagtgctttgcttttgtttaatggaaattttcctaattagggttttaaactgctttggtttgttaagaatgtttt |
1703414 |
T |
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| Q |
101 |
aataagaagtgtttgagtttttgtgtaatgaaattattatggcattctatgttaaaatatgtattttagttccttc |
176 |
Q |
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| T |
1703413 |
aataagaagtgtttgagtttttgtgtaatgaaattattatggcattctatgttaaaatatgtatgttagttccttc |
1703338 |
T |
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