View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20664_high_1 (Length: 917)
Name: NF20664_high_1
Description: NF20664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20664_high_1 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 483; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 367 - 917
Target Start/End: Complemental strand, 40218445 - 40217896
Alignment:
| Q |
367 |
cagaaacacacatcagacatcacacattatctaaactttttcgccagtacacataatacatatggtataacacagttttaatataaataggaaggttaaa |
466 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
40218445 |
cagaaacacacatcagacatcacacattatctaagctttttcgccagtacacataatacatatggtataacacagttttaatataaataggaaagttaaa |
40218346 |
T |
|
| Q |
467 |
gtttaagaagaatggaatgatttacctacacgagttgaaataaaataattttgtaatttgaatannnnnnnnnaatttatcatttgtttttagaacgttt |
566 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40218345 |
gtttaagaagaatggaatgatttacctacacgagttgaaataaaataattttgtaatttgaatatttttttt-aatttatcatttgtttttagaacgttt |
40218247 |
T |
|
| Q |
567 |
ctaacttctaagtcatggtcatgcaaaacttatggagtatcagtatataactgattttggtaaggagaggttgacagttactagtatatatatattccaa |
666 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40218246 |
ctaacttctaagtcatggtcacgcaaaacttatggagtatcagtatataactgattttggtaaggagaggttgacagttactagtatatatatattccaa |
40218147 |
T |
|
| Q |
667 |
tatcgtgtgtaaaaatactttcatatttcaggtaaacatctctatattctaaaaacatacatgagaatattgtatctgaaaataaaaagatgcatatatt |
766 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40218146 |
tttcgtgtgtaaaaatactttcatatttcaggtaaacatctctatattctaaaaacatacatgagaatattgtgtctgaaaataaaaagatgcatatatt |
40218047 |
T |
|
| Q |
767 |
ttaggtattttatgaatactttattatcgtatatcgtatattcaagacaaataaaaagcacgatgtataccactgtcaatacttttgtttatcaaggaaa |
866 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
40218046 |
ttaggtattttatgaatactttattatcgtatatcgtatattcaagacaaataaaaagaacgatatataccactgtcaatacttttgtttatcaaggaaa |
40217947 |
T |
|
| Q |
867 |
aagaaattaataaattcaactatttgctccggtggcaaaatgataaatctt |
917 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
40217946 |
aagaaattaataaattcaaatatttgatccggtggcaaaatgataaatctt |
40217896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 13 - 338
Target Start/End: Complemental strand, 40218799 - 40218474
Alignment:
| Q |
13 |
cataggacataaacgtgcacatgtgtcaactttcttcggtagatagactatgacctagtaataaagatgaaaattaaattagaactatgacaactcaaag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
40218799 |
cataggacataaacgtgcacatgtgtcaactttcttcggtagatagactatgacctagtaataaagatgaaaattaaattaggactatgacaactcaaag |
40218700 |
T |
|
| Q |
113 |
aggataacgaaaacaagaaaaatgtgttttgaattgtgttannnnnnnctccaattcctttcattttgatctacacacgctctaaaaagctccaccctgt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
40218699 |
aggataacgaaaacaagaaaaatgtgttttgaattgtgttatttttttctccaattcctttcattttgatctacacacgctctaaaaagcttcaccctgt |
40218600 |
T |
|
| Q |
213 |
tgaacaaatggaggaagaaaaaattagtattcctatttctgaaccaacaaataaaaagttatggcatgcaaatttgggaattttctaagtcatgcactct |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40218599 |
tgaacaaatggaggaagaaaaaattagtattcctatttctgaaccaacaaataaaaagttatggcatgcaaatttgggaattttctaagtcatgcactct |
40218500 |
T |
|
| Q |
313 |
ttattgtgtagtgtatccaaatatac |
338 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
40218499 |
ttattgtgtagtgtatccaaatatac |
40218474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 246 - 324
Target Start/End: Original strand, 23107345 - 23107421
Alignment:
| Q |
246 |
tatttctgaaccaacaaataaaaagttatggcatgcaaatttgggaattttctaagtcatgcactctttattgtgtagt |
324 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||| |||||||| || ||||||| ||||||| ||||| |
|
|
| T |
23107345 |
tatttctgaaccaacaaataaaaagttat-gcgtgcaaatttgaaaattttct-agggatgcactttttattgagtagt |
23107421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University