View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20664_high_10 (Length: 435)
Name: NF20664_high_10
Description: NF20664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20664_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 11 - 419
Target Start/End: Original strand, 2750964 - 2751367
Alignment:
| Q |
11 |
cagagaaagatatatgatacactaaatgtctttattaatcttcaaagcatttttagcacaagttaacacataatagtactcatcacatcatacaccttgt |
110 |
Q |
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| T |
2750964 |
cagagaaagatatatgatacactaaatgtctttattaatcttcaaagcatttttagcacaagttaacacataatagtactcatcacatcatacaccttgt |
2751063 |
T |
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| Q |
111 |
acaatcaaccagataaccagttatgcaacattttaatctcctagactagatccacaacctctagtttgtagtagattctttgccactaattatagtagct |
210 |
Q |
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| T |
2751064 |
acaatcaaccagataaccagttatgcaacattttaatctcctagactagatccacaacctctagtttgtagtagattctttgccactaattatagtagct |
2751163 |
T |
|
| Q |
211 |
taggccctttaatcaaatgtccagggttaaaaccttggcaatgagaacaaagctgaatctgatggaagaagagtggtcaattaacaggtactctacatct |
310 |
Q |
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| T |
2751164 |
taggccctttaatcaaatgtccagggttaaaaccttggcaatgagaacaaagctgaatctgatggaagaagagtggtcaattaacaggtactctacatct |
2751263 |
T |
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| Q |
311 |
ctgaggaattaggcctactgttctatatatatatgtgtgtgtttggatctgtgtttgcacatagaataccacgtccaaacacacacatatatagaacagg |
410 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2751264 |
ctgaggaattaggcctactgttctat-----tatgtgtgtgtttggatctgtgtttgcacatagaataccacgtccaaacacacacatatatagaacagg |
2751358 |
T |
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| Q |
411 |
gaaattttt |
419 |
Q |
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| T |
2751359 |
gaaattttt |
2751367 |
T |
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