View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20664_high_11 (Length: 415)
Name: NF20664_high_11
Description: NF20664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20664_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Original strand, 3636429 - 3636829
Alignment:
| Q |
1 |
ctcagaactgacacatgagaggaggtcacctattaatctaaaccataggacacgccaccgcttactgggtcctaaaacttctgtaaatgatatcagtata |
100 |
Q |
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| T |
3636429 |
ctcagaactgacacatgagaggaggtcacctattaatctaaaccataggacacgccaccgcttactgggtcctaaaacttctgtaaatgatatcagtata |
3636528 |
T |
|
| Q |
101 |
gagaaaaatataaaccaatatgtagtagcagaaactgttgttcagcatcaacagaacaataatcttattaaggtacaagttgagtgcaataaatccgttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3636529 |
gagaaaaatataaaccaatatgtagtagcagaaactgttgttcagcatcaacagaacaataatcttattaaggtacaagttgagtgcaataaatccgttg |
3636628 |
T |
|
| Q |
201 |
atggacatgttaaagtcagaaagcaagtacatttctcagataaagtggaggagcttcatcaaaaaaggaaattgtcaaagttggaatcttcagataaaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3636629 |
atggacatgttaaagtcagaaagcaagtacatttctcagataaagtggaggagcttcatcaaaaaaggaaattgtcaaagttggaatcttcagataaaaa |
3636728 |
T |
|
| Q |
301 |
atgtatgtatttagctctgttcgtttgatgtatctttcagttttaggaattactttttgtagaaattacttatttttcgctgcaataatgtaggttcatc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3636729 |
atgtatgtatttagctctgttcgtttgatgtatctttcagttttaggaattactttttgtagaaattacttatttttcgctgcaataatgtaggttcatc |
3636828 |
T |
|
| Q |
401 |
t |
401 |
Q |
| |
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| |
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|
| T |
3636829 |
t |
3636829 |
T |
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