View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20664_high_18 (Length: 292)

Name: NF20664_high_18
Description: NF20664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20664_high_18
NF20664_high_18
[»] scaffold0006 (2 HSPs)
scaffold0006 (19-287)||(130560-130828)
scaffold0006 (37-142)||(81993-82098)
[»] chr1 (2 HSPs)
chr1 (19-287)||(13601903-13602171)
chr1 (54-221)||(19153164-19153326)


Alignment Details
Target: scaffold0006 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 130828 - 130560
Alignment:
Q  19 tctgccactgcctcgttagaatttcgaaaccatcaccaccgctctttcgatcaatttctcgcaaccacttaataagtgccaagtttaattaaaatccaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  130828 tctgccactgcctcgttagaatttcgaaaccatcaccaccgctctttcgatcaatttctcgcaaccacttaataagtgccaagtttaattaaaatccaat 130729  T
Q  119 ataaggcagttattaacttgttttgcaagaaatcttatgaaatccccataattccttgttgaaatcctatgtatgatatgagataaatattgacaatgaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  130728 ataaggcagttattaacttgttttgcaagaaatcttatgaaatccccatcattccttgttgaaatcctaagtatgatatgagataaatattgaaaatgaa 130629  T
Q  219 taattattttattattgaatgttgacaagtacaaacaattacattgtttagttcaatagaataatctac 287  Q
    |||| |||||||||||| |||| ||||||||||||| ||||||||||| ||||||||||||||| ||||    
T  130628 taatgattttattattgcatgtcgacaagtacaaacgattacattgttgagttcaatagaataaactac 130560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 37 - 142
Target Start/End: Complemental strand, 82098 - 81993
Alignment:
Q  37 gaatttcgaaaccatcaccaccgctctttcgatcaatttctcgcaaccacttaataagtgccaagtttaattaaaatccaatataaggcagttattaact 136  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||| | ||||||||||| |||  |||||||| ||||||||||| |||||||||    
T  82098 gaatttcgtaaccatcaccaacgctctttcgatcaatttctcgcaaccacctgataagtgccaaattttcttaaaatctaatataaggcacttattaact 81999  T
Q  137 tgtttt 142  Q
    ||||||    
T  81998 tgtttt 81993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 13602171 - 13601903
Alignment:
Q  19 tctgccactgcctcgttagaatttcgaaaccatcaccaccgctctttcgatcaatttctcgcaaccacttaataagtgccaagtttaattaaaatccaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13602171 tctgccactgcctcgttagaatttcgaaaccatcaccaccgctctttcgatcaatttctcgcaaccacttaataagtgccaagtttaattaaaatccaat 13602072  T
Q  119 ataaggcagttattaacttgttttgcaagaaatcttatgaaatccccataattccttgttgaaatcctatgtatgatatgagataaatattgacaatgaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  13602071 ataaggcagttattaacttgttttgcaagaaatcttatgaaatccccatcattccttgttgaaatcctaagtatgatatgagataaatattgaaaatgaa 13601972  T
Q  219 taattattttattattgaatgttgacaagtacaaacaattacattgtttagttcaatagaataatctac 287  Q
    |||| |||||||||||| |||| ||||||||||||| ||||||||||| ||||||||||||||| ||||    
T  13601971 taatgattttattattgcatgtcgacaagtacaaacgattacattgttgagttcaatagaataaactac 13601903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 54 - 221
Target Start/End: Original strand, 19153164 - 19153326
Alignment:
Q  54 ccaccgctctttcgatcaatttctcgcaaccacttaataagtgccaagtttaattaaaatccaatataaggcagttattaacttgttttgcaagaaatct 153  Q
    ||||||||||||| |||||||||| |||||||| | ||||| |||||||||| ||||||||||||||||  |  |||||||||| ||||| ||||||| |    
T  19153164 ccaccgctctttcaatcaatttctggcaaccacctgataagcgccaagtttacttaaaatccaatataaaacgcttattaacttcttttgaaagaaatat 19153263  T
Q  154 tatgaaatccccataattccttgttgaaatcctatgtatgatatgagataaatattgacaatgaataa 221  Q
    | ||||||||||| ||||||||||||||||||||||     || ||||||||||||| ||||||||||    
T  19153264 tgtgaaatccccacaattccttgttgaaatcctatg-----taggagataaatattggcaatgaataa 19153326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University