View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20664_high_20 (Length: 250)

Name: NF20664_high_20
Description: NF20664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20664_high_20
NF20664_high_20
[»] chr7 (26 HSPs)
chr7 (5-237)||(5841564-5841797)
chr7 (191-248)||(28234923-28234980)
chr7 (194-250)||(9379991-9380047)
chr7 (194-250)||(47459416-47459472)
chr7 (199-250)||(3043888-3043939)
chr7 (199-250)||(6369533-6369584)
chr7 (199-250)||(6377998-6378049)
chr7 (193-244)||(25648234-25648285)
chr7 (194-237)||(40857425-40857468)
chr7 (194-240)||(1573923-1573969)
chr7 (194-240)||(4106554-4106600)
chr7 (192-250)||(6384590-6384648)
chr7 (194-240)||(10061098-10061144)
chr7 (194-236)||(20350262-20350304)
chr7 (194-240)||(31717297-31717343)
chr7 (194-240)||(42557584-42557630)
chr7 (194-235)||(5222660-5222701)
chr7 (194-250)||(2228152-2228208)
chr7 (194-250)||(2354869-2354925)
chr7 (199-239)||(12014815-12014855)
chr7 (218-250)||(24333365-24333397)
chr7 (194-250)||(35157156-35157212)
chr7 (194-250)||(38930350-38930406)
chr7 (194-250)||(45236930-45236986)
chr7 (199-238)||(46734200-46734240)
chr7 (194-250)||(48729756-48729812)
[»] chr1 (24 HSPs)
chr1 (194-240)||(36586251-36586297)
chr1 (199-250)||(11797471-11797522)
chr1 (199-250)||(29511113-29511164)
chr1 (194-242)||(39787730-39787778)
chr1 (202-240)||(37771077-37771115)
chr1 (199-240)||(40241493-40241534)
chr1 (202-250)||(45007763-45007811)
chr1 (194-250)||(49500861-49500917)
chr1 (194-250)||(50248029-50248085)
chr1 (194-240)||(17068152-17068198)
chr1 (194-240)||(25821032-25821078)
chr1 (194-240)||(26261375-26261421)
chr1 (194-240)||(30455204-30455250)
chr1 (194-240)||(49948241-49948287)
chr1 (192-236)||(14211194-14211239)
chr1 (199-240)||(18216349-18216390)
chr1 (199-240)||(32880661-32880702)
chr1 (218-250)||(236594-236626)
chr1 (218-250)||(8312600-8312632)
chr1 (194-250)||(40685529-40685585)
chr1 (194-250)||(40809285-40809341)
chr1 (190-250)||(41651069-41651129)
chr1 (197-237)||(43500228-43500268)
chr1 (194-250)||(48314167-48314223)
[»] chr8 (36 HSPs)
chr8 (194-236)||(24420073-24420115)
chr8 (192-250)||(33637852-33637910)
chr8 (198-250)||(39068475-39068527)
chr8 (196-238)||(32922958-32923000)
chr8 (194-240)||(41562442-41562488)
chr8 (194-242)||(5895875-5895923)
chr8 (194-250)||(7772122-7772178)
chr8 (197-237)||(23514597-23514637)
chr8 (194-250)||(26737971-26738027)
chr8 (199-250)||(14243704-14243755)
chr8 (199-250)||(31665184-31665235)
chr8 (194-237)||(35222273-35222316)
chr8 (194-237)||(42650168-42650211)
chr8 (191-237)||(403663-403709)
chr8 (194-240)||(2442762-2442808)
chr8 (194-240)||(8971805-8971851)
chr8 (194-240)||(14188090-14188136)
chr8 (194-240)||(14725304-14725350)
chr8 (194-240)||(16395373-16395419)
chr8 (194-240)||(20993537-20993583)
chr8 (194-240)||(25199046-25199092)
chr8 (194-240)||(34143436-34143482)
chr8 (194-240)||(43820868-43820914)
chr8 (194-239)||(5704711-5704756)
chr8 (199-240)||(6845065-6845106)
chr8 (199-240)||(10096617-10096658)
chr8 (199-240)||(26675562-26675603)
chr8 (199-240)||(37953788-37953829)
chr8 (194-250)||(4430807-4430863)
chr8 (194-250)||(4694759-4694815)
chr8 (194-250)||(6317300-6317356)
chr8 (194-250)||(11098146-11098202)
chr8 (218-250)||(31291243-31291275)
chr8 (194-242)||(35421698-35421746)
chr8 (199-250)||(36442759-36442811)
chr8 (194-250)||(45406323-45406379)
[»] chr2 (31 HSPs)
chr2 (194-240)||(11816858-11816904)
chr2 (193-250)||(7929044-7929101)
chr2 (194-240)||(31516287-31516333)
chr2 (194-240)||(42007297-42007343)
chr2 (199-240)||(11061388-11061429)
chr2 (193-246)||(18469508-18469561)
chr2 (194-250)||(30854807-30854864)
chr2 (199-240)||(43461416-43461457)
chr2 (194-242)||(36794804-36794852)
chr2 (192-240)||(39070017-39070065)
chr2 (199-250)||(38140696-38140747)
chr2 (194-240)||(7975096-7975142)
chr2 (194-240)||(12236121-12236167)
chr2 (199-237)||(18779916-18779954)
chr2 (194-240)||(35476572-35476618)
chr2 (199-248)||(19633842-19633891)
chr2 (199-248)||(19830743-19830792)
chr2 (199-240)||(31819643-31819684)
chr2 (194-238)||(433138-433182)
chr2 (194-250)||(15897214-15897270)
chr2 (194-250)||(16535015-16535071)
chr2 (189-237)||(18999324-18999372)
chr2 (194-250)||(23080170-23080226)
chr2 (194-238)||(23458680-23458724)
chr2 (194-250)||(23957052-23957108)
chr2 (218-250)||(25219708-25219740)
chr2 (194-250)||(34667044-34667100)
chr2 (194-250)||(35706852-35706908)
chr2 (194-250)||(42160329-42160385)
chr2 (194-250)||(43035440-43035496)
chr2 (194-250)||(45049385-45049441)
[»] chr5 (25 HSPs)
chr5 (194-242)||(39143441-39143489)
chr5 (194-240)||(4617848-4617894)
chr5 (199-237)||(12819630-12819668)
chr5 (194-240)||(14107252-14107298)
chr5 (194-240)||(24652396-24652442)
chr5 (194-240)||(39151008-39151054)
chr5 (199-240)||(10458731-10458772)
chr5 (194-250)||(1287315-1287371)
chr5 (194-237)||(9068803-9068846)
chr5 (208-250)||(4430013-4430055)
chr5 (194-240)||(6041926-6041972)
chr5 (194-240)||(7153270-7153316)
chr5 (194-236)||(10165532-10165574)
chr5 (194-240)||(11968776-11968822)
chr5 (194-240)||(42448211-42448257)
chr5 (199-240)||(23219202-23219243)
chr5 (199-240)||(37940923-37940964)
chr5 (199-240)||(43150240-43150281)
chr5 (194-250)||(4164959-4165015)
chr5 (194-250)||(12878190-12878246)
chr5 (199-239)||(26019677-26019717)
chr5 (194-250)||(26802334-26802390)
chr5 (194-250)||(26809884-26809940)
chr5 (194-250)||(26824911-26824967)
chr5 (208-240)||(41071076-41071108)
[»] chr3 (26 HSPs)
chr3 (193-244)||(32765516-32765567)
chr3 (198-240)||(29216810-29216852)
chr3 (194-240)||(32590972-32591018)
chr3 (209-250)||(6419737-6419778)
chr3 (199-240)||(46311525-46311566)
chr3 (199-240)||(50238922-50238963)
chr3 (194-250)||(24751753-24751809)
chr3 (199-250)||(33095982-33096034)
chr3 (199-250)||(54923490-54923542)
chr3 (194-240)||(10047872-10047918)
chr3 (194-240)||(17500927-17500973)
chr3 (194-240)||(24250725-24250771)
chr3 (190-240)||(37312524-37312574)
chr3 (194-240)||(38127924-38127970)
chr3 (194-240)||(40193038-40193084)
chr3 (194-240)||(53583961-53584007)
chr3 (199-240)||(12948815-12948856)
chr3 (202-239)||(31122918-31122955)
chr3 (197-250)||(32956773-32956826)
chr3 (194-250)||(3917766-3917822)
chr3 (194-250)||(10228957-10229013)
chr3 (194-250)||(19961369-19961425)
chr3 (199-239)||(36540110-36540150)
chr3 (199-239)||(41921511-41921551)
chr3 (194-250)||(47410824-47410880)
chr3 (218-250)||(53473108-53473140)
[»] chr6 (17 HSPs)
chr6 (192-250)||(1847504-1847562)
chr6 (194-240)||(7098806-7098852)
chr6 (194-240)||(32643810-32643856)
chr6 (197-240)||(6556565-6556608)
chr6 (199-250)||(21513077-21513128)
chr6 (194-240)||(4480474-4480520)
chr6 (194-240)||(28594153-28594199)
chr6 (199-240)||(2958998-2959039)
chr6 (191-240)||(4128942-4128991)
chr6 (197-250)||(17546039-17546092)
chr6 (199-250)||(1266814-1266866)
chr6 (194-250)||(2314671-2314727)
chr6 (193-237)||(2711303-2711347)
chr6 (194-238)||(8374142-8374186)
chr6 (194-242)||(15953234-15953282)
chr6 (194-250)||(17534595-17534651)
chr6 (202-238)||(29479437-29479473)
[»] chr4 (25 HSPs)
chr4 (193-250)||(17815214-17815271)
chr4 (194-250)||(31435990-31436046)
chr4 (199-250)||(31570916-31570968)
chr4 (192-236)||(36607999-36608043)
chr4 (218-250)||(37340179-37340211)
chr4 (199-250)||(18813375-18813426)
chr4 (194-237)||(34123409-34123452)
chr4 (194-236)||(5060496-5060538)
chr4 (194-240)||(35318540-35318586)
chr4 (199-236)||(5880372-5880409)
chr4 (199-240)||(28033197-28033238)
chr4 (199-240)||(28187246-28187287)
chr4 (196-237)||(40994863-40994904)
chr4 (217-250)||(41049064-41049097)
chr4 (202-250)||(579314-579362)
chr4 (194-250)||(1982561-1982617)
chr4 (206-250)||(3780326-3780370)
chr4 (194-250)||(5397012-5397068)
chr4 (194-250)||(9569475-9569531)
chr4 (222-250)||(10108638-10108666)
chr4 (218-250)||(22717122-22717154)
chr4 (218-250)||(22988063-22988095)
chr4 (194-250)||(42154210-42154266)
chr4 (205-237)||(45731271-45731303)
chr4 (194-250)||(46488189-46488245)
[»] scaffold0008 (1 HSPs)
scaffold0008 (194-240)||(39395-39441)
[»] scaffold0778 (1 HSPs)
scaffold0778 (199-240)||(823-864)
[»] scaffold0633 (1 HSPs)
scaffold0633 (190-250)||(3867-3927)


Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 5 - 237
Target Start/End: Complemental strand, 5841797 - 5841564
Alignment:
Q  5 tgtcgaagaatatagtttaattttaaaacattaattggtttaaagataaatacatttaaggtgacattataaatactaaaatttcagtatgttgttggta 104  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5841797 tgtcgaaccatatagtttaattttaaaacattaattggtttaaagataaatacatttaaggtgacattataaatactaaaatttcagtatgttgttggta 5841698  T
Q  105 g-tttacttaatctaaatttcaatgactttaaaaatgtatagtagaaactatgtgacatgatattttttaggcaatatgtgacatgattgtccacaagtc 203  Q
    | ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5841697 gctttacttaatctaaatttcaatgacattaaaaatgtatagtagaaagtatgtgacatgatattttttaggcaatatgtgacatgattgtccacaagtc 5841598  T
Q  204 ctaactcaattggtaaaatgtcgaaattgttagg 237  Q
    ||| ||||||||||||||| ||||||||||||||    
T  5841597 ctagctcaattggtaaaatatcgaaattgttagg 5841564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 28234923 - 28234980
Alignment:
Q  191 ttgtccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcat 248  Q
    ||||||||||||| || ||||||||| |||||| ||| |||||||||||| |||||||    
T  28234923 ttgtccacaagtcttagctcaattggcaaaatgccgatattgttaggccggacgtcat 28234980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 9379991 - 9380047
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| |||||||| ||||| ||| ||||||||||||||||||||||| | |||||||    
T  9379991 tccagaagtcctagctcaactggcaaaatgtcgaaattgttaggccggatgtcatga 9380047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 47459416 - 47459472
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| ||||| || ||||| ||||||||||||||||||||||||||| | |||||||    
T  47459416 tccaaaagtcatagctcaactggtaaaatgtcgaaattgttaggccggatgtcatga 47459472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 250
Target Start/End: Complemental strand, 3043939 - 3043888
Alignment:
Q  199 aagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||||||| |||||||| |||||||| ||||||||||||||| | |||||||    
T  3043939 aagtcctagctcaattgataaaatgttgaaattgttaggccggatgtcatga 3043888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 6369533 - 6369584
Alignment:
Q  199 aagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| ||||||||| |||||||||| |||||||||||||||| | |||||||    
T  6369533 aagttctaactcaactggtaaaatgccgaaattgttaggccggatgtcatga 6369584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 6377998 - 6378049
Alignment:
Q  199 aagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| ||||||||| |||||||||| |||||||||||||||| | |||||||    
T  6377998 aagttctaactcaactggtaaaatgccgaaattgttaggccggatgtcatga 6378049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 25648285 - 25648234
Alignment:
Q  193 gtccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacg 244  Q
    ||||| ||||||||  ||||||||| |||||||||||||||||||| |||||    
T  25648285 gtccataagtcctagttcaattggttaaatgtcgaaattgttaggctgaacg 25648234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 40857468 - 40857425
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttagg 237  Q
    |||| |||||||| ||||| ||||||||||||||||||||||||    
T  40857468 tccagaagtcctagctcaaatggtaaaatgtcgaaattgttagg 40857425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 1573969 - 1573923
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||| |||||||| ||||| |||||||||| ||||||||||||||||    
T  1573969 tccagaagtcctagctcaactggtaaaatgccgaaattgttaggccg 1573923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 4106554 - 4106600
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||| |||||||| ||||| |||||||||| ||||||||||||||||    
T  4106554 tccagaagtcctagctcaactggtaaaatgccgaaattgttaggccg 4106600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 6384648 - 6384590
Alignment:
Q  192 tgtccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||||| |||||||| ||||| |||||||||  |||||||||||||||| ||| |||||    
T  6384648 tgtccagaagtcctagctcaactggtaaaataccgaaattgttaggccggacgccatga 6384590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 10061144 - 10061098
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    ||||||||||||| ||||| ||| |||||| ||||||||||||||||    
T  10061144 tccacaagtcctagctcaactggcaaaatgccgaaattgttaggccg 10061098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 20350262 - 20350304
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttag 236  Q
    |||| |||||||||||||||||| |||||| ||||||||||||    
T  20350262 tccagaagtcctaactcaattggcaaaatgccgaaattgttag 20350304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 31717297 - 31717343
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||| |||||||| ||||| |||||||||| ||||||||||||||||    
T  31717297 tccagaagtcctagctcaactggtaaaatgccgaaattgttaggccg 31717343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 42557630 - 42557584
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||| |||||||| ||||||||| |||||| ||||||||||||||||    
T  42557630 tccataagtcctagctcaattggcaaaatgccgaaattgttaggccg 42557584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 5222701 - 5222660
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgtta 235  Q
    |||| |||||||||||||| |||||||||| |||||||||||    
T  5222701 tccagaagtcctaactcaactggtaaaatgccgaaattgtta 5222660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 2228208 - 2228152
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| ||||| || ||||| ||| ||||||||||||||||||||||| | |||||||    
T  2228208 tccagaagtcgtagctcaactggcaaaatgtcgaaattgttaggccggatgtcatga 2228152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 2354925 - 2354869
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| |||||||| ||||| ||| |||||| |||||||||||||||| | |||||||    
T  2354925 tccagaagtcctagctcaactggcaaaatgccgaaattgttaggccggatgtcatga 2354869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 12014855 - 12014815
Alignment:
Q  199 aagtcctaactcaattggtaaaatgtcgaaattgttaggcc 239  Q
    |||||||||||||| |||||||||  |||||||||||||||    
T  12014855 aagtcctaactcaactggtaaaataccgaaattgttaggcc 12014815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 24333365 - 24333397
Alignment:
Q  218 aaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||||||||||||||||||||||| ||||||||    
T  24333365 aaaatgtcgaaattgttaggccgagcgtcatga 24333397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 35157212 - 35157156
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| |||||||| ||||| ||| |||||| |||||||||||||||| | |||||||    
T  35157212 tccagaagtcctagctcaactggcaaaatgccgaaattgttaggccggatgtcatga 35157156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 38930406 - 38930350
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| |||||||| ||||||||| ||| |||| |||||||||||| ||| |||||||    
T  38930406 tccagaagtcctagctcaattggcaaagtgtcaaaattgttaggctgaatgtcatga 38930350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 45236930 - 45236986
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| |||||||| ||||| ||| |||||| |||||||||||||||| | |||||||    
T  45236930 tccagaagtcctagctcaactggcaaaatgccgaaattgttaggccggatgtcatga 45236986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 238
Target Start/End: Complemental strand, 46734240 - 46734200
Alignment:
Q  199 aagtcctaactcaattggtaaaa-tgtcgaaattgttaggc 238  Q
    |||||||||||||||||| |||| |||||||||||||||||    
T  46734240 aagtcctaactcaattggcaaaaatgtcgaaattgttaggc 46734200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 48729812 - 48729756
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| |||||||| ||||| ||| |||||| |||||||||||||||| | |||||||    
T  48729812 tccagaagtcctagctcaactggcaaaatgccgaaattgttaggccggatgtcatga 48729756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 36586251 - 36586297
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  36586251 tccacaagtcctaactcaactggtaaaatgtcgaaattgttaggccg 36586297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 199 - 250
Target Start/End: Complemental strand, 11797522 - 11797471
Alignment:
Q  199 aagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||||||||||||| ||| ||||||||||||||||||||||||| |||||||    
T  11797522 aagtcctaactcaactggcaaaatgtcgaaattgttaggccgaatgtcatga 11797471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 29511113 - 29511164
Alignment:
Q  199 aagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||||||| |||||||||||||||| |||||||||||||||||| |||||||    
T  29511113 aagtcctagctcaattggtaaaatgacgaaattgttaggccgaatgtcatga 29511164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 39787778 - 39787730
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaa 242  Q
    ||||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  39787778 tccacaagtcctagctcaactggtaaaatgtcgaaattgttagaccgaa 39787730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 37771077 - 37771115
Alignment:
Q  202 tcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  37771077 tcctagctcaattggtaaaatgtcgaaattgttaggccg 37771115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 40241493 - 40241534
Alignment:
Q  199 aagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||||||||||||| || ||||||||||||||||||||||||    
T  40241493 aagtcctaactcaactgataaaatgtcgaaattgttaggccg 40241534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 45007811 - 45007763
Alignment:
Q  202 tcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    ||||| ||||||||||||||| ||||||||||||||||| | |||||||    
T  45007811 tcctagctcaattggtaaaatatcgaaattgttaggccggatgtcatga 45007763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 49500861 - 49500917
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    ||||||||||||| ||||| ||| |||||| |||||||||||||||| | |||||||    
T  49500861 tccacaagtcctagctcaactggcaaaatgccgaaattgttaggccggatgtcatga 49500917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 50248029 - 50248085
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| |||||||| ||||| || |||||||||||||||||||||||| | |||||||    
T  50248029 tccagaagtcctagctcaactgataaaatgtcgaaattgttaggccggatgtcatga 50248085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 17068152 - 17068198
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||| |||||||| ||||| |||||||||| ||||||||||||||||    
T  17068152 tccagaagtcctagctcaactggtaaaatgccgaaattgttaggccg 17068198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 25821078 - 25821032
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||| |||||||| ||||| || ||||||||||||||||||||||||    
T  25821078 tccagaagtcctagctcaactgataaaatgtcgaaattgttaggccg 25821032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 26261421 - 26261375
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    ||||||||||||| ||||| ||| |||||| ||||||||||||||||    
T  26261421 tccacaagtcctagctcaactggaaaaatgccgaaattgttaggccg 26261375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 30455204 - 30455250
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||| |||||||| ||||| || ||||||||||||||||||||||||    
T  30455204 tccagaagtcctagctcaactgataaaatgtcgaaattgttaggccg 30455250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 49948241 - 49948287
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||| |||||||| ||||| ||| |||||||||||||||||||||||    
T  49948241 tccagaagtcctagctcaactggcaaaatgtcgaaattgttaggccg 49948287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 14211239 - 14211194
Alignment:
Q  192 tgtccacaagtcctaactcaattggt-aaaatgtcgaaattgttag 236  Q
    |||||||||||||||||| ||||||| |||||||| ||||||||||    
T  14211239 tgtccacaagtcctaacttaattggtaaaaatgtcaaaattgttag 14211194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 18216349 - 18216390
Alignment:
Q  199 aagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||||||| |||||| ||||||||| ||||||||||||||||    
T  18216349 aagtcctagctcaatgggtaaaatgccgaaattgttaggccg 18216390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 32880702 - 32880661
Alignment:
Q  199 aagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||||||||||||| ||| |||||| ||||||||||||||||    
T  32880702 aagtcctaactcaactggcaaaatgccgaaattgttaggccg 32880661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 236594 - 236626
Alignment:
Q  218 aaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    ||||||||||||||||||||||| |||||||||    
T  236594 aaaatgtcgaaattgttaggccggacgtcatga 236626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 8312632 - 8312600
Alignment:
Q  218 aaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||||||||||||||||||||||||||| ||||    
T  8312632 aaaatgtcgaaattgttaggccgaacgttatga 8312600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 40685529 - 40685585
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| |||||||| ||||| ||| |||||||||||||||||||| || | |||||||    
T  40685529 tccagaagtcctagctcaactggcaaaatgtcgaaattgttaggtcggatgtcatga 40685585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 40809341 - 40809285
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| |||||||| ||||| ||| |||||| |||||||||||||||| | |||||||    
T  40809341 tccagaagtcctagctcaactggcaaaatgccgaaattgttaggccggatgtcatga 40809285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 41651069 - 41651129
Alignment:
Q  190 attgtccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    ||||| || |||||||| ||||| |||||||||| |||||||||||||  | |||||||||    
T  41651069 attgttcataagtcctagctcaactggtaaaatgccgaaattgttaggttggacgtcatga 41651129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 43500268 - 43500228
Alignment:
Q  197 acaagtcctaactcaattggtaaaatgtcgaaattgttagg 237  Q
    ||||||| || ||||| ||||||||||||||||||||||||    
T  43500268 acaagtcttagctcaactggtaaaatgtcgaaattgttagg 43500228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 48314167 - 48314223
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| |||||||| ||||| ||| |||||| |||||||||||||||| | |||||||    
T  48314167 tccagaagtcctagctcaactggcaaaatgccgaaattgttaggccggatgtcatga 48314223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 24420115 - 24420073
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttag 236  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  24420115 tccacaagtcctaactcaattggcaaaatgtcgaaattgttag 24420073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 33637852 - 33637910
Alignment:
Q  192 tgtccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    ||||||||||| ||||||||| | ||||||| || ||||||||||||||||||||||||    
T  33637852 tgtccacaagttctaactcaactagtaaaatctcaaaattgttaggccgaacgtcatga 33637910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 39068527 - 39068475
Alignment:
Q  198 caagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    ||||||||| ||||| |||||||| ||| ||||||||||||||||||||||||    
T  39068527 caagtcctagctcaactggtaaaacgtcaaaattgttaggccgaacgtcatga 39068475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 32923000 - 32922958
Alignment:
Q  196 cacaagtcctaactcaattggtaaaatgtcgaaattgttaggc 238  Q
    ||||||||||||||||||||| |||||| ||||||||||||||    
T  32923000 cacaagtcctaactcaattggcaaaatgccgaaattgttaggc 32922958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 41562442 - 41562488
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||| |||||||| ||||| |||||||||||||||||||||||||||    
T  41562442 tccagaagtcctagctcaactggtaaaatgtcgaaattgttaggccg 41562488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 5895923 - 5895875
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaa 242  Q
    |||| |||||||| ||||| ||| |||||||||||||||||||||||||    
T  5895923 tccataagtcctagctcaactggcaaaatgtcgaaattgttaggccgaa 5895875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 7772178 - 7772122
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| |||||||| ||||| |||||||||| |||||||||||||||| | |||||||    
T  7772178 tccagaagtcctagctcaactggtaaaatgccgaaattgttaggccggatgtcatga 7772122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 23514597 - 23514637
Alignment:
Q  197 acaagtcctaactcaattggtaaaatgtcgaaattgttagg 237  Q
    |||||||||||||||| |||| |||||||||||||||||||    
T  23514597 acaagtcctaactcaactggttaaatgtcgaaattgttagg 23514637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 26737971 - 26738027
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| |||||||| ||||| |||||||||| |||||||||||||||| | |||||||    
T  26737971 tccagaagtcctagctcaactggtaaaatgccgaaattgttaggccggatgtcatga 26738027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 14243704 - 14243755
Alignment:
Q  199 aagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||||||| ||||| |||||||||| |||||||||||||| ||| |||||||    
T  14243704 aagtcctagctcaactggtaaaatgccgaaattgttaggctgaatgtcatga 14243755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 250
Target Start/End: Complemental strand, 31665235 - 31665184
Alignment:
Q  199 aagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    ||||||||  |||| || |||||| |||||||||||||||||||||||||||    
T  31665235 aagtcctagttcaactgataaaatatcgaaattgttaggccgaacgtcatga 31665184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 35222273 - 35222316
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttagg 237  Q
    ||||||| ||||| ||||| ||||||||||||||||||||||||    
T  35222273 tccacaaatcctagctcaactggtaaaatgtcgaaattgttagg 35222316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 42650168 - 42650211
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttagg 237  Q
    |||||||||||||||||||  ||||||||| |||||||||||||    
T  42650168 tccacaagtcctaactcaaccggtaaaatgccgaaattgttagg 42650211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 403663 - 403709
Alignment:
Q  191 ttgtccacaagtcctaactcaattggtaaaatgtcgaaattgttagg 237  Q
    |||||||||||||||| ||||| || ||||||| |||||||||||||    
T  403663 ttgtccacaagtcctagctcaactgataaaatgccgaaattgttagg 403709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 2442762 - 2442808
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||| |||||||| ||||| ||| |||||||||||||||||||||||    
T  2442762 tccataagtcctagctcaactggcaaaatgtcgaaattgttaggccg 2442808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 8971805 - 8971851
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||||||||||||| ||||||| ||||||||| ||||||||| ||||    
T  8971805 tccacaagtcctaattcaattgataaaatgtcaaaattgttaagccg 8971851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 14188090 - 14188136
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||| |||||||| ||||| ||| |||||||||||||||||||||||    
T  14188090 tccagaagtcctagctcaactggcaaaatgtcgaaattgttaggccg 14188136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 14725304 - 14725350
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    ||||||| ||||| ||||| || ||||||||||||||||||||||||    
T  14725304 tccacaaatcctagctcaactgataaaatgtcgaaattgttaggccg 14725350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 16395373 - 16395419
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||| |||||||||||||| ||||||||||  |||||||||||||||    
T  16395373 tccagaagtcctaactcaactggtaaaatgctgaaattgttaggccg 16395419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 20993537 - 20993583
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||| |||||||| |||||| | ||||||||||||||||||||||||    
T  20993537 tccataagtcctagctcaatcgataaaatgtcgaaattgttaggccg 20993583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 25199046 - 25199092
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||| |||||||| ||||| |||||||||| ||||||||||||||||    
T  25199046 tccagaagtcctagctcaactggtaaaatgccgaaattgttaggccg 25199092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 34143482 - 34143436
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||| |||||||||||||||| | |||||| ||||||||||||||||    
T  34143482 tccagaagtcctaactcaattagcaaaatgccgaaattgttaggccg 34143436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 43820868 - 43820914
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||| |||||||||||||| ||| |||||| ||||||||||||||||    
T  43820868 tccagaagtcctaactcaactggcaaaatgccgaaattgttaggccg 43820914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 5704756 - 5704711
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggcc 239  Q
    ||||||||||||| ||||| ||  ||||||||||||||||||||||    
T  5704756 tccacaagtcctagctcaactgacaaaatgtcgaaattgttaggcc 5704711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 6845106 - 6845065
Alignment:
Q  199 aagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||||||| ||||||||| |||||| ||||||||||||||||    
T  6845106 aagtcctagctcaattggcaaaatgccgaaattgttaggccg 6845065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 10096617 - 10096658
Alignment:
Q  199 aagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||||||| ||||| ||| |||||||||||||||||||||||    
T  10096617 aagtcctagctcaactggcaaaatgtcgaaattgttaggccg 10096658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 26675562 - 26675603
Alignment:
Q  199 aagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||||||| ||||| |||||||||| ||||||||||||||||    
T  26675562 aagtcctagctcaactggtaaaatgccgaaattgttaggccg 26675603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 37953788 - 37953829
Alignment:
Q  199 aagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||||||| ||||| ||| |||||||||||||||||||||||    
T  37953788 aagtcctagctcaactggaaaaatgtcgaaattgttaggccg 37953829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 4430863 - 4430807
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| |||||||| ||||| ||| |||||| |||||||||||||||| | |||||||    
T  4430863 tccagaagtcctagctcaactggcaaaatgccgaaattgttaggccggatgtcatga 4430807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 4694815 - 4694759
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| |||||||| ||||| ||| |||||||||||||||||||| || | |||||||    
T  4694815 tccataagtcctagctcaactggcaaaatgtcgaaattgttaggtcggatgtcatga 4694759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 6317300 - 6317356
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| |||||||| ||||| ||| |||||| |||||||||||||||| | |||||||    
T  6317300 tccagaagtcctagctcaactggcaaaatgccgaaattgttaggccggatgtcatga 6317356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 11098202 - 11098146
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| |||||||||||||| ||  ||||| |||||||||||||| |||| |||||||    
T  11098202 tccagaagtcctaactcaactgacaaaatatcgaaattgttaggtcgaatgtcatga 11098146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 31291243 - 31291275
Alignment:
Q  218 aaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||||| ||||||||||||||||||||||||||    
T  31291243 aaaatgccgaaattgttaggccgaacgtcatga 31291275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 35421746 - 35421698
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaa 242  Q
    |||| ||||||||  |||| ||| |||||||||||||||||||||||||    
T  35421746 tccagaagtcctagttcaactggcaaaatgtcgaaattgttaggccgaa 35421698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 250
Target Start/End: Complemental strand, 36442811 - 36442759
Alignment:
Q  199 aagtcctaactcaattggtaaaa-tgtcgaaattgttaggccgaacgtcatga 250  Q
    |||||||||||||| || ||||| || |||||||||||||||| |||||||||    
T  36442811 aagtcctaactcaactgataaaaatgccgaaattgttaggccggacgtcatga 36442759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 45406323 - 45406379
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| |||||||| |||||| | ||||||| |||||||||||||||| | |||||||    
T  45406323 tccaaaagtcctagctcaatcgataaaatgccgaaattgttaggccggatgtcatga 45406379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 11816904 - 11816858
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||    
T  11816904 tccagaagtcctagctcaattggtaaaatgtcgaaattgttaggccg 11816858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 7929044 - 7929101
Alignment:
Q  193 gtccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    ||||| ||||||||||||||||||||||||| ||||||| ||| |||| |||||||||    
T  7929044 gtccataagtcctaactcaattggtaaaatgccgaaattattaagccggacgtcatga 7929101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 31516333 - 31516287
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    ||||||||||||||||||| ||| |||||| ||||||||||||||||    
T  31516333 tccacaagtcctaactcaactggaaaaatgccgaaattgttaggccg 31516287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 42007343 - 42007297
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||| |||||||| ||||| |||||||||||||||||||||||||||    
T  42007343 tccagaagtcctagctcaactggtaaaatgtcgaaattgttaggccg 42007297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 11061388 - 11061429
Alignment:
Q  199 aagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||||||||||||| || ||||||||||||||||||||||||    
T  11061388 aagtcctaactcaactgataaaatgtcgaaattgttaggccg 11061429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 18469561 - 18469508
Alignment:
Q  193 gtccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtc 246  Q
    ||||| |||||||| ||||| |||  ||||||||||||||||||||||||||||    
T  18469561 gtccataagtcctagctcaactggctaaatgtcgaaattgttaggccgaacgtc 18469508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 30854864 - 30854807
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaa-tgtcgaaattgttaggccgaacgtcatga 250  Q
    ||||||||||||||||||| || ||||| |||||||||||||||| |||| |||||||    
T  30854864 tccacaagtcctaactcaactgataaaaatgtcgaaattgttaggacgaatgtcatga 30854807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 43461457 - 43461416
Alignment:
Q  199 aagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||||||| ||||| |||||||||||||||||||||||||||    
T  43461457 aagtcctagctcaactggtaaaatgtcgaaattgttaggccg 43461416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 36794804 - 36794852
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaa 242  Q
    |||| |||||||| ||||| |||||||||||| ||||||||||||||||    
T  36794804 tccagaagtcctagctcaactggtaaaatgtcaaaattgttaggccgaa 36794852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 39070017 - 39070065
Alignment:
Q  192 tgtccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||||| |||||||| ||||| |||||||||| ||||||||||||||||    
T  39070017 tgtccagaagtcctagctcaactggtaaaatgccgaaattgttaggccg 39070065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 38140696 - 38140747
Alignment:
Q  199 aagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||||||||||||| |||||||||| ||||||||||| |||| | |||||||    
T  38140696 aagtcctaactcaactggtaaaatgccgaaattgttaagccggatgtcatga 38140747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 7975142 - 7975096
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    ||||||||||||| ||||| ||| |||||| ||||||||||||||||    
T  7975142 tccacaagtcctagctcaactggcaaaatgccgaaattgttaggccg 7975096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 12236121 - 12236167
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||| |||||||| ||||| |||||||||| ||||||||||||||||    
T  12236121 tccagaagtcctagctcaactggtaaaatgccgaaattgttaggccg 12236167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 237
Target Start/End: Original strand, 18779916 - 18779954
Alignment:
Q  199 aagtcctaactcaattggtaaaatgtcgaaattgttagg 237  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  18779916 aagtcctagttcaattggtaaaatgtcgaaattgttagg 18779954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 35476618 - 35476572
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||| |||||||| ||||| ||| |||||||||||||||||||||||    
T  35476618 tccagaagtcctagctcaactggcaaaatgtcgaaattgttaggccg 35476572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 19633842 - 19633891
Alignment:
Q  199 aagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcat 248  Q
    |||||||||||||| | |||||||||||||||||||| || ||| |||||    
T  19633842 aagtcctaactcaaattgtaaaatgtcgaaattgttaagctgaatgtcat 19633891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 19830743 - 19830792
Alignment:
Q  199 aagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcat 248  Q
    |||||||||||||| | |||||||||||||||||||| || ||| |||||    
T  19830743 aagtcctaactcaaattgtaaaatgtcgaaattgttaagctgaatgtcat 19830792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 31819643 - 31819684
Alignment:
Q  199 aagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||||||||||||| ||| |||||||||||||| ||||||||    
T  31819643 aagtcctaactcaactggcaaaatgtcgaaattattaggccg 31819684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 433138 - 433182
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggc 238  Q
    |||| |||||||||||||| ||  |||||||||||||||||||||    
T  433138 tccagaagtcctaactcaactgacaaaatgtcgaaattgttaggc 433182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 15897214 - 15897270
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| |||||||| ||||| ||| |||||| |||||||||||||||| | |||||||    
T  15897214 tccagaagtcctagctcaactggcaaaatgccgaaattgttaggccggatgtcatga 15897270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 16535071 - 16535015
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| ||||||||  |||| || |||||||||||||||||||||||| | |||||||    
T  16535071 tccagaagtcctagttcaactgataaaatgtcgaaattgttaggccggatgtcatga 16535015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 18999324 - 18999372
Alignment:
Q  189 gattgtccacaagtcctaactcaattggtaaaatgtcgaaattgttagg 237  Q
    |||| |||| |||||||||||||| ||| |||||| |||||||||||||    
T  18999324 gattatccagaagtcctaactcaactggcaaaatgccgaaattgttagg 18999372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 23080226 - 23080170
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| |||||||| ||||| ||| |||||| |||||||||||||||| | |||||||    
T  23080226 tccagaagtcctagctcaactggcaaaatgccgaaattgttaggccggatgtcatga 23080170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 23458680 - 23458724
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggc 238  Q
    ||||||||||||||||||| ||| ||||||  |||||||||||||    
T  23458680 tccacaagtcctaactcaactggaaaaatgctgaaattgttaggc 23458724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 23957052 - 23957108
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| |||| ||| ||||| ||| ||||||||||||||||||||||| | |||||||    
T  23957052 tccagaagttctagctcaactggcaaaatgtcgaaattgttaggccggatgtcatga 23957108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 25219740 - 25219708
Alignment:
Q  218 aaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    ||||||||||||||||||||||| |||||||||    
T  25219740 aaaatgtcgaaattgttaggccggacgtcatga 25219708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 34667044 - 34667100
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| |||||||| ||||| ||| |||||| |||||||||||||||| | |||||||    
T  34667044 tccagaagtcctagctcaactggcaaaatgccgaaattgttaggccggatgtcatga 34667100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 35706852 - 35706908
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| |||||||| ||||| ||| |||||||||||||||||||| || | |||||||    
T  35706852 tccagaagtcctagctcaactggcaaaatgtcgaaattgttaggtcggatgtcatga 35706908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 42160385 - 42160329
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| |||||||| ||||| ||| |||||| |||||||||||||||| | |||||||    
T  42160385 tccagaagtcctagctcaactggcaaaatgccgaaattgttaggccggatgtcatga 42160329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 43035440 - 43035496
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| |||||||| ||||||||| |||||  |||||||||||||||| | |||||||    
T  43035440 tccagaagtcctagctcaattggcaaaataccgaaattgttaggccggatgtcatga 43035496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 45049385 - 45049441
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| ||||| || ||||| ||| ||||||||||||||||||||||| | |||||||    
T  45049385 tccagaagtcttagctcaactggcaaaatgtcgaaattgttaggccggatgtcatga 45049441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 39143441 - 39143489
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaa 242  Q
    ||||||||||||| ||||| ||| |||||||||||||||||||||||||    
T  39143441 tccacaagtcctagctcaactggcaaaatgtcgaaattgttaggccgaa 39143489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 4617894 - 4617848
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||| |||||||| ||||| |||||||||||||||||||||||||||    
T  4617894 tccagaagtcctagctcaactggtaaaatgtcgaaattgttaggccg 4617848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 237
Target Start/End: Complemental strand, 12819668 - 12819630
Alignment:
Q  199 aagtcctaactcaattggtaaaatgtcgaaattgttagg 237  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  12819668 aagtcctaactcaattggtaaaatgccgaaattgttagg 12819630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 14107252 - 14107298
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    ||||||||||||| |||||||||||||||| ||||| ||||||||||    
T  14107252 tccacaagtcctagctcaattggtaaaatgccgaaactgttaggccg 14107298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 24652442 - 24652396
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||| |||||||||||||| ||| |||||||||||||||||||||||    
T  24652442 tccagaagtcctaactcaactggcaaaatgtcgaaattgttaggccg 24652396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 39151054 - 39151008
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||| |||||||| ||||| |||||||||||||||||||||||||||    
T  39151054 tccagaagtcctagctcaactggtaaaatgtcgaaattgttaggccg 39151008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 10458731 - 10458772
Alignment:
Q  199 aagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    ||||||||||||||||||||||||| | ||||||||||||||    
T  10458731 aagtcctaactcaattggtaaaatgccaaaattgttaggccg 10458772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 1287315 - 1287371
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| |||||||| |||||||||||||||| ||||||||||||| || | |||||||    
T  1287315 tccagaagtcctagctcaattggtaaaatgccgaaattgttaggtcggatgtcatga 1287371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 9068803 - 9068846
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttagg 237  Q
    |||| |||||||| ||||| ||||||||||||||||||||||||    
T  9068803 tccataagtcctagctcaactggtaaaatgtcgaaattgttagg 9068846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 250
Target Start/End: Complemental strand, 4430055 - 4430013
Alignment:
Q  208 ctcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    ||||| ||||||||||||||||||||||||||| | |||||||    
T  4430055 ctcaactggtaaaatgtcgaaattgttaggccggatgtcatga 4430013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 6041972 - 6041926
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||| |||||||| ||||| |||||||||||||||||| ||||||||    
T  6041972 tccagaagtcctagctcaactggtaaaatgtcgaaattattaggccg 6041926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 7153316 - 7153270
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    ||||||||||||| ||||| |||||||  ||||||||||||||||||    
T  7153316 tccacaagtcctagctcaactggtaaatagtcgaaattgttaggccg 7153270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 10165532 - 10165574
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttag 236  Q
    |||| |||||||||||||||||| |||||| ||||||||||||    
T  10165532 tccataagtcctaactcaattggcaaaatgccgaaattgttag 10165574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 11968776 - 11968822
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||| |||||||||||||| ||  |||||||||||||||||||||||    
T  11968776 tccagaagtcctaactcaactgtcaaaatgtcgaaattgttaggccg 11968822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 42448211 - 42448257
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||| |||||||| ||||| ||| |||||||||||||||||||||||    
T  42448211 tccagaagtcctagctcaactggcaaaatgtcgaaattgttaggccg 42448257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 23219243 - 23219202
Alignment:
Q  199 aagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||||||||||||| |||||||||| | ||||||||||||||    
T  23219243 aagtcctaactcaactggtaaaatgccaaaattgttaggccg 23219202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 37940923 - 37940964
Alignment:
Q  199 aagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||||||| ||||| ||| |||||||||||||||||||||||    
T  37940923 aagtcctagctcaactggcaaaatgtcgaaattgttaggccg 37940964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 43150281 - 43150240
Alignment:
Q  199 aagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||||||||||||| ||| |||||| ||||||||||||||||    
T  43150281 aagtcctaactcaactggcaaaatggcgaaattgttaggccg 43150240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 4164959 - 4165015
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| |||||||| ||||| ||| |||||| |||||||||||||||| | |||||||    
T  4164959 tccagaagtcctagctcaactggcaaaatgccgaaattgttaggccggatgtcatga 4165015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 12878246 - 12878190
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| |||||||| ||||| ||| |||||| |||||||||||||||| | |||||||    
T  12878246 tccagaagtcctagctcaactggcaaaatgccgaaattgttaggccggatgtcatga 12878190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 26019677 - 26019717
Alignment:
Q  199 aagtcctaactcaattggtaaaatgtcgaaattgttaggcc 239  Q
    |||| ||||||||||||  ||||||||||||||||||||||    
T  26019677 aagttctaactcaattgacaaaatgtcgaaattgttaggcc 26019717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 26802334 - 26802390
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| ||||| |||||||| ||| |||||| | |||||||||||||||| |||||||    
T  26802334 tccagaagtcttaactcaactggcaaaatgccaaaattgttaggccgaatgtcatga 26802390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 26809884 - 26809940
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| ||||| |||||||| ||| |||||| | |||||||||||||||| |||||||    
T  26809884 tccagaagtcttaactcaactggcaaaatgccaaaattgttaggccgaatgtcatga 26809940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 26824911 - 26824967
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| ||||| |||||||| ||| |||||| | |||||||||||||||| |||||||    
T  26824911 tccagaagtcttaactcaactggcaaaatgccaaaattgttaggccgaatgtcatga 26824967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 41071076 - 41071108
Alignment:
Q  208 ctcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||||||||||||||| ||||||||||||||||    
T  41071076 ctcaattggtaaaatgccgaaattgttaggccg 41071108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 32765516 - 32765567
Alignment:
Q  193 gtccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacg 244  Q
    |||||||||||||||||||| ||||||||| || |||||||||| |||||||    
T  32765516 gtccacaagtcctaactcaactggtaaaatatcaaaattgttagaccgaacg 32765567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 29216810 - 29216852
Alignment:
Q  198 caagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||||| |||||||||||| |||||||||||||||||||||||    
T  29216810 caagtcttaactcaattggaaaaatgtcgaaattgttaggccg 29216852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 32590972 - 32591018
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||| |||||||| ||||| |||||||||||||||||||||||||||    
T  32590972 tccagaagtcctagctcaactggtaaaatgtcgaaattgttaggccg 32591018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 6419778 - 6419737
Alignment:
Q  209 tcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||||||||||||||||||||||||||||||| | |||||||    
T  6419778 tcaattggtaaaatgtcgaaattgttaggccggatgtcatga 6419737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 46311566 - 46311525
Alignment:
Q  199 aagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||||||| ||||| |||||||||||||||||||||||||||    
T  46311566 aagtcctagctcaactggtaaaatgtcgaaattgttaggccg 46311525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 50238963 - 50238922
Alignment:
Q  199 aagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||||||| ||||| |||||||||||||||||||||||||||    
T  50238963 aagtcctagctcaactggtaaaatgtcgaaattgttaggccg 50238922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 24751753 - 24751809
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    ||||||||||||| ||||| ||| |||||| |||||||||||||||| | |||||||    
T  24751753 tccacaagtcctagctcaactggcaaaatgccgaaattgttaggccggatgtcatga 24751809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 33095982 - 33096034
Alignment:
Q  199 aagtcctaactcaattggtaaaa-tgtcgaaattgttaggccgaacgtcatga 250  Q
    |||||||||||||| ||| |||| || ||||||||||||||||||||||||||    
T  33095982 aagtcctaactcaactggcaaaaatgacgaaattgttaggccgaacgtcatga 33096034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 54923490 - 54923542
Alignment:
Q  199 aagtcctaactcaattggtaaaa-tgtcgaaattgttaggccgaacgtcatga 250  Q
    |||||||||||||| |||||||| |||||||||||||||| || |||||||||    
T  54923490 aagtcctaactcaactggtaaaaatgtcgaaattgttaggtcggacgtcatga 54923542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 10047872 - 10047918
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||| |||||||| |||||||||||||||| ||||||||||| ||||    
T  10047872 tccagaagtcctagctcaattggtaaaatgccgaaattgttatgccg 10047918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 17500927 - 17500973
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||| |||||||||||||| ||| |||||| ||||||||||||||||    
T  17500927 tccagaagtcctaactcaactggaaaaatgccgaaattgttaggccg 17500973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 24250725 - 24250771
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||| |||||||| ||||||||| |||||| ||||||||||||||||    
T  24250725 tccagaagtcctagctcaattggcaaaatgccgaaattgttaggccg 24250771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 37312524 - 37312574
Alignment:
Q  190 attgtccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||||||| |||||||| ||||| |||||||||  ||||||||||||||||    
T  37312524 attgtccagaagtcctagctcaactggtaaaataccgaaattgttaggccg 37312574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 38127970 - 38127924
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||| |||||||| ||||| ||| |||||||||||||||||||||||    
T  38127970 tccagaagtcctagctcaactggcaaaatgtcgaaattgttaggccg 38127924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 40193084 - 40193038
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||| |||||||| || || |||||||||||||||||||||||||||    
T  40193084 tccagaagtcctagcttaactggtaaaatgtcgaaattgttaggccg 40193038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 53583961 - 53584007
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||| |||||||| ||||| ||| |||||||||||||||||||||||    
T  53583961 tccagaagtcctagctcaactggcaaaatgtcgaaattgttaggccg 53584007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 12948815 - 12948856
Alignment:
Q  199 aagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||||||| ||||| |||||||||| ||||||||||||||||    
T  12948815 aagtcctagctcaactggtaaaatgacgaaattgttaggccg 12948856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 31122918 - 31122955
Alignment:
Q  202 tcctaactcaattggtaaaatgtcgaaattgttaggcc 239  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  31122918 tcctaactcaactggtaaaatgtcaaaattgttaggcc 31122955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 32956773 - 32956826
Alignment:
Q  197 acaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    ||||||||||||||||  |||||||||  ||||||||||||||  |||||||||    
T  32956773 acaagtcctaactcaaccggtaaaatgctgaaattgttaggccagacgtcatga 32956826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 3917766 - 3917822
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| |||||||| ||||| ||| |||||| |||||||||||||||| | |||||||    
T  3917766 tccagaagtcctagctcaactggcaaaatgccgaaattgttaggccggatgtcatga 3917822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 10228957 - 10229013
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| ||||| |||||||| ||| |||||| | |||||||||||||||| |||||||    
T  10228957 tccagaagtcttaactcaactggcaaaatgccaaaattgttaggccgaatgtcatga 10229013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 19961369 - 19961425
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| |||||||||||||| ||  |||||||||||||||||||| || | |||||||    
T  19961369 tccagaagtcctaactcaactgacaaaatgtcgaaattgttaggtcggatgtcatga 19961425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 36540110 - 36540150
Alignment:
Q  199 aagtcctaactcaattggtaaaatgtcgaaattgttaggcc 239  Q
    ||||||||  |||| ||||||||||||||||||||||||||    
T  36540110 aagtcctagttcaagtggtaaaatgtcgaaattgttaggcc 36540150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 41921511 - 41921551
Alignment:
Q  199 aagtcctaactcaattggtaaaatgtcgaaattgttaggcc 239  Q
    |||||||| ||||| |||||||||| |||||||||||||||    
T  41921511 aagtcctagctcaactggtaaaatgccgaaattgttaggcc 41921551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 47410880 - 47410824
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| |||||||| ||||| ||| |||||||||||||||||||| || | |||||||    
T  47410880 tccagaagtcctagctcaactggcaaaatgtcgaaattgttaggtcggatgtcatga 47410824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 53473108 - 53473140
Alignment:
Q  218 aaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||||||||||||||||||||||||||| ||||    
T  53473108 aaaatgtcgaaattgttaggccgaacgtaatga 53473140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 1847562 - 1847504
Alignment:
Q  192 tgtccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    ||||||||||||||||||||| | |||||||||||||||||  |||  |||||||||||    
T  1847562 tgtccacaagtcctaactcaactagtaaaatgtcgaaattgaaaggttgaacgtcatga 1847504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 7098806 - 7098852
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||| |||||||| ||||| |||||||||||||||||||||||||||    
T  7098806 tccagaagtcctagctcaactggtaaaatgtcgaaattgttaggccg 7098852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 32643856 - 32643810
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||| |||||||||||||| |||||||||| ||||||||||||||||    
T  32643856 tccagaagtcctaactcaactggtaaaatgccgaaattgttaggccg 32643810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 6556608 - 6556565
Alignment:
Q  197 acaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||||| ||| |||||||||||||||| ||||||||||||||||    
T  6556608 acaagttctagctcaattggtaaaatgccgaaattgttaggccg 6556565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 21513077 - 21513128
Alignment:
Q  199 aagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||||||| ||||| ||| ||||||||||||||||||||||| | |||||||    
T  21513077 aagtcctagctcaactggcaaaatgtcgaaattgttaggccggatgtcatga 21513128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 4480474 - 4480520
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||| |||||||||||||| ||| |||||| ||||||||||||||||    
T  4480474 tccagaagtcctaactcaactggcaaaatgccgaaattgttaggccg 4480520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 28594199 - 28594153
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||| |||||||||||||| ||| |||| ||||||||||||||||||    
T  28594199 tccagaagtcctaactcaactggcaaaaggtcgaaattgttaggccg 28594153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 2958998 - 2959039
Alignment:
Q  199 aagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||| |||| |||| |||||||||||||||||||||||||||    
T  2958998 aagttctaattcaactggtaaaatgtcgaaattgttaggccg 2959039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 4128942 - 4128991
Alignment:
Q  191 ttgtccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    ||||||| |||||||| ||||| |||||||||  ||||||||||||||||    
T  4128942 ttgtccagaagtcctagctcaactggtaaaataccgaaattgttaggccg 4128991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 17546039 - 17546092
Alignment:
Q  197 acaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||||||||| ||||||||  |||||||||||||||||||| || | |||||||    
T  17546039 acaagtcctagctcaattgacaaaatgtcgaaattgttaggtcggatgtcatga 17546092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 250
Target Start/End: Complemental strand, 1266866 - 1266814
Alignment:
Q  199 aagtcctaactcaattggtaaaa-tgtcgaaattgttaggccgaacgtcatga 250  Q
    ||||||||||||||  ||||||| || |||||||||||||||| |||||||||    
T  1266866 aagtcctaactcaaccggtaaaaatgccgaaattgttaggccggacgtcatga 1266814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 2314727 - 2314671
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| |||||||| ||||| ||| |||||| |||||||||||||||| | |||||||    
T  2314727 tccagaagtcctagctcaactggcaaaatgccgaaattgttaggccggatgtcatga 2314671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 2711303 - 2711347
Alignment:
Q  193 gtccacaagtcctaactcaattggtaaaatgtcgaaattgttagg 237  Q
    ||||| |||||||||||||| |||||||||  |||||||||||||    
T  2711303 gtccagaagtcctaactcaactggtaaaataccgaaattgttagg 2711347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 8374142 - 8374186
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggc 238  Q
    |||| |||| ||||||||| |||||||||| ||||||||||||||    
T  8374142 tccagaagttctaactcaactggtaaaatgccgaaattgttaggc 8374186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 15953234 - 15953282
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaa 242  Q
    |||| |||||||| ||||| |||||||||| |||||||||||| |||||    
T  15953234 tccagaagtcctagctcaactggtaaaatgccgaaattgttagaccgaa 15953282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 17534651 - 17534595
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| |||||||| ||||| ||| |||||| |||||||||||||||| | |||||||    
T  17534651 tccagaagtcctagctcaactggcaaaatgccgaaattgttaggccggatgtcatga 17534595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 29479437 - 29479473
Alignment:
Q  202 tcctaactcaattggtaaaatgtcgaaattgttaggc 238  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  29479437 tcctaactcaactggcaaaatgtcgaaattgttaggc 29479473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 17815271 - 17815214
Alignment:
Q  193 gtccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    ||||||||||||||  |||| ||| |||||| ||||||||||||| ||||||||||||    
T  17815271 gtccacaagtcctagttcaactggcaaaatgccgaaattgttaggtcgaacgtcatga 17815214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 31436046 - 31435990
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||||||||||||  |||| |||||||||| |||||||||||||||| | |||||||    
T  31436046 tccacaagtcctagttcaactggtaaaatgccgaaattgttaggccggatgtcatga 31435990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 250
Target Start/End: Complemental strand, 31570968 - 31570916
Alignment:
Q  199 aagtcctaactcaattggt-aaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    ||||||||||||||||||| |||||||| ||||| |||||||||| |||||||    
T  31570968 aagtcctaactcaattggtaaaaatgtcaaaattattaggccgaatgtcatga 31570916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 36607999 - 36608043
Alignment:
Q  192 tgtccacaagtcctaactcaattggtaaaatgtcgaaattgttag 236  Q
    |||||||||||||||  |||||||| |||||||||||||||||||    
T  36607999 tgtccacaagtcctagttcaattggcaaaatgtcgaaattgttag 36608043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 37340211 - 37340179
Alignment:
Q  218 aaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||||||||||||||||||||||||||||||||    
T  37340211 aaaatgtcgaaattgttaggccgaacgtcatga 37340179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 18813375 - 18813426
Alignment:
Q  199 aagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||||||||||||| ||| |||||| |||||||||||||||| | |||||||    
T  18813375 aagtcctaactcaactggcaaaatgccgaaattgttaggccggatgtcatga 18813426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 34123409 - 34123452
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttagg 237  Q
    |||| |||||||| |||||||||||||||||| |||||||||||    
T  34123409 tccagaagtcctagctcaattggtaaaatgtcaaaattgttagg 34123452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 5060538 - 5060496
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttag 236  Q
    |||| |||||||||||||| || ||||||||||||||||||||    
T  5060538 tccagaagtcctaactcaactgataaaatgtcgaaattgttag 5060496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 35318540 - 35318586
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||| |||||||||||||| ||| |||||| ||||||||||||||||    
T  35318540 tccagaagtcctaactcaactggcaaaatgccgaaattgttaggccg 35318586  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 236
Target Start/End: Complemental strand, 5880409 - 5880372
Alignment:
Q  199 aagtcctaactcaattggtaaaatgtcgaaattgttag 236  Q
    |||||||||||||| ||| |||||||||||||||||||    
T  5880409 aagtcctaactcaactggcaaaatgtcgaaattgttag 5880372  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 28033197 - 28033238
Alignment:
Q  199 aagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||||||| ||||| |||||||||| ||||||||||||||||    
T  28033197 aagtcctagctcaactggtaaaatgccgaaattgttaggccg 28033238  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 28187287 - 28187246
Alignment:
Q  199 aagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||||||| ||||| || ||||||||||||||||||||||||    
T  28187287 aagtcctagctcaactgataaaatgtcgaaattgttaggccg 28187246  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 40994863 - 40994904
Alignment:
Q  196 cacaagtcctaactcaattggtaaaatgtcgaaattgttagg 237  Q
    ||||||||||| ||||| || |||||||||||||||||||||    
T  40994863 cacaagtcctatctcaactgataaaatgtcgaaattgttagg 40994904  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 217 - 250
Target Start/End: Original strand, 41049064 - 41049097
Alignment:
Q  217 taaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||||| |||||||||||||||||||||||||||    
T  41049064 taaaatatcgaaattgttaggccgaacgtcatga 41049097  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 579362 - 579314
Alignment:
Q  202 tcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    ||||| ||||| || |||||||||||||||||||||||| | |||||||    
T  579362 tcctagctcaactgataaaatgtcgaaattgttaggccggatgtcatga 579314  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 1982561 - 1982617
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| |||||||| ||||| ||| |||||| |||||||||||||||| | |||||||    
T  1982561 tccagaagtcctagctcaactggcaaaatgccgaaattgttaggccgtatgtcatga 1982617  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 3780326 - 3780370
Alignment:
Q  206 aactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||||||| ||||||||| |||||||||||||||  |||||||||    
T  3780326 aactcaatcggtaaaatgccgaaattgttaggccagacgtcatga 3780370  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 5397068 - 5397012
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| |||||||| ||||| ||| |||||| |||||||||||||||| | |||||||    
T  5397068 tccagaagtcctagctcaactggcaaaatgccgaaattgttaggccggatgtcatga 5397012  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 9569475 - 9569531
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| |||||||| ||||| ||| |||||| |||||||||||||||| | |||||||    
T  9569475 tccagaagtcctagctcaactggcaaaatgccgaaattgttaggccggatgtcatga 9569531  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 222 - 250
Target Start/End: Complemental strand, 10108666 - 10108638
Alignment:
Q  222 tgtcgaaattgttaggccgaacgtcatga 250  Q
    |||||||||||||||||||||||||||||    
T  10108666 tgtcgaaattgttaggccgaacgtcatga 10108638  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 22717122 - 22717154
Alignment:
Q  218 aaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||||||||||||||||||| ||||||||||||    
T  22717122 aaaatgtcgaaattgttaggtcgaacgtcatga 22717154  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 22988095 - 22988063
Alignment:
Q  218 aaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||||||||||||||||||| ||||||||||||    
T  22988095 aaaatgtcgaaattgttaggtcgaacgtcatga 22988063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 42154266 - 42154210
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| |||||||| ||||| ||| |||||| |||||||||||||||| | |||||||    
T  42154266 tccagaagtcctagctcaactggcaaaatgccgaaattgttaggccggatgtcatga 42154210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 45731271 - 45731303
Alignment:
Q  205 taactcaattggtaaaatgtcgaaattgttagg 237  Q
    ||||||||| |||||||||||||||||||||||    
T  45731271 taactcaataggtaaaatgtcgaaattgttagg 45731303  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 46488245 - 46488189
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    |||| |||||||| ||||| ||| |||||| |||||||||||||||| | |||||||    
T  46488245 tccagaagtcctagctcaactggcaaaatgccgaaattgttaggccggatgtcatga 46488189  T

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Target: scaffold0008 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 39441 - 39395
Alignment:
Q  194 tccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||| |||||||| ||||| |||||||||| ||||||||||||||||    
T  39441 tccagaagtcctagctcaactggtaaaatgccgaaattgttaggccg 39395  T

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Target: scaffold0778 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0778
Description:

Target: scaffold0778; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 823 - 864
Alignment:
Q  199 aagtcctaactcaattggtaaaatgtcgaaattgttaggccg 240  Q
    |||||||| ||||| ||| |||||||||||||||||||||||    
T  823 aagtcctagctcaactggcaaaatgtcgaaattgttaggccg 864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0633 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 3927 - 3867
Alignment:
Q  190 attgtccacaagtcctaactcaattggtaaaatgtcgaaattgttaggccgaacgtcatga 250  Q
    ||||| || |||||||| ||||| |||||||||| |||||||||||||  | |||||||||    
T  3927 attgttcataagtcctagctcaactggtaaaatgccgaaattgttaggttggacgtcatga 3867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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