View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20664_low_13 (Length: 358)
Name: NF20664_low_13
Description: NF20664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20664_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 82 - 348
Target Start/End: Original strand, 39996625 - 39996891
Alignment:
| Q |
82 |
taataaatgtgtgggataaggtaacggtaatattctgaagaaggtgaaaagtcacctagttcggataatgttaacgaggattgtgcttcgatgaattgaa |
181 |
Q |
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| T |
39996625 |
taatcaatgtgtgggataaggtaacggtaatattccgaagaaggtgaaaagtcacctagttcggataatgttaacgaggattgtgcttcgatgaattgaa |
39996724 |
T |
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| Q |
182 |
cacccaatgagttgcattcaagatcaaaacgaccatttcctttcgagtgtaaacgaccggcaagtggataaaacggcacaaggactttgcttaatgactc |
281 |
Q |
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| T |
39996725 |
cacccaatgagttgcattcgagatcaaaacgaccatttcctttcgagtgtaaacgaccggcaagtggataaaacggcacaaggactttgcttaatgactc |
39996824 |
T |
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| Q |
282 |
tttcaaagtggtggcgattttagtgggggagggaagccagttttttgggggctggtaaaagtatatt |
348 |
Q |
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| T |
39996825 |
tttcaaagtggtggcgattttagtgggggaggtaagccagttttttgggggctggtaaaagtatatt |
39996891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 88 - 344
Target Start/End: Complemental strand, 53036964 - 53036708
Alignment:
| Q |
88 |
atgtgtgggataaggtaacggtaatattctgaagaaggtgaaaagtcacctagttcggataatgttaacgaggattgtgcttcgatgaattgaacaccca |
187 |
Q |
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| T |
53036964 |
atgtgcgggataaggtaaggataatattcacaagaaggtgaaaagtcacctagttcggataaggttaacgacgattctgcttcgatgaattgagcaccca |
53036865 |
T |
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| Q |
188 |
atgagttgcattcaagatcaaaacgaccatttcctttcgagtgtaaacgaccggcaagtggataaaacggcacaaggactttgcttaatgactctttcaa |
287 |
Q |
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| T |
53036864 |
atgagttgcattcgacatcaaaacgaccgctttctttccattgtaaacgaccggctagtggataaaacggcacaaggactttgctcaatgagtctttcaa |
53036765 |
T |
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| Q |
288 |
agtggtggcgattttagtgggggagggaagccagttttttgggggctggtaaaagta |
344 |
Q |
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| T |
53036764 |
agtggtggcgattttattgggggaggtaagccatttttgtggggggcggtaaaagta |
53036708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 39996483 - 39996394
Alignment:
| Q |
1 |
gattgcacgtggtgagcctttgaaaatggtgccaaggtttctcgatacaaacatgttgtcgccaaaatgttgcaacagtgttaataaatg |
90 |
Q |
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| T |
39996483 |
gattgcacgtggtgagcctttgaaaatggtgccaaggtttctcgatacaaacatgttgtcgccaaaacgttgtaacagtgttaataaatg |
39996394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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