View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20664_low_16 (Length: 296)
Name: NF20664_low_16
Description: NF20664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20664_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 104; Significance: 7e-52; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 123 - 295
Target Start/End: Complemental strand, 3805706 - 3805539
Alignment:
| Q |
123 |
acccattaattttgtgaaaataccataatacccctgagttatttttaatattactgccatgccactcactcacccacatccctcccactctcattgccgg |
222 |
Q |
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||||||||||| || ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3805706 |
acccattaattctgggaaaataccataatattcctaagttatttttaatattactgccatgccactcactcacccaca----tcccactctcattgccaa |
3805611 |
T |
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| Q |
223 |
ttttctccagaaccggaaagaaaagaacaagccatattttctcttctccccacccacaggaaaatcccacgac |
295 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||| |
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| T |
3805610 |
ttttctccagaacgggaaagaaaagaacaagccatattttcgcttctcgccacccacagg-caatcccacgac |
3805539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 1529628 - 1529583
Alignment:
| Q |
5 |
tcaaaaaatatgtcctataaaactgattgcagaacttcgaagcctg |
50 |
Q |
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|||||||||| |||| |||||||||||||||||||| ||||||||| |
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| T |
1529628 |
tcaaaaaataagtccgataaaactgattgcagaactccgaagcctg |
1529583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 4879380 - 4879328
Alignment:
| Q |
123 |
acccattaattttgtgaaaataccataatacccctgagttatttttaatatta |
175 |
Q |
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||||||| ||| ||||||||||||||| ||||| | ||||| ||||||||||| |
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| T |
4879380 |
acccatttattatgtgaaaataccatattacccttaagttaattttaatatta |
4879328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 4200797 - 4200728
Alignment:
| Q |
13 |
tatgtcctataaaactgattgcagaacttcgaagcctgaaatttgttcagcatctccaacaacagtttca |
82 |
Q |
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| T |
4200797 |
tatgtcctataaaactgattgcagaacttcgaagcctgaaatttgttcagcatctccaacgacagtttca |
4200728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 123 - 271
Target Start/End: Complemental strand, 17978724 - 17978582
Alignment:
| Q |
123 |
acccattaattttgtgaaaataccataatacccctgagttatttttaatattactgccatgccactcactcacccacatccctcccactctcattgccgg |
222 |
Q |
| |
|
||||||| ||||||||||||||| ||||| ||||||| ||| ||||||||||||| |||||||||||| | ||| | ||||||||| ||| | |
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| T |
17978724 |
acccatttattttgtgaaaatactataatgcccctgaattaattttaatattactaccatgccactca---aacca---ctatcccactctaattccaat |
17978631 |
T |
|
| Q |
223 |
ttttctccagaaccggaaagaaaagaacaagccatattttctcttctcc |
271 |
Q |
| |
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|||||||||||| ||||||||| ||| ||||||||||||||||||||| |
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|
| T |
17978630 |
atttctccagaacgggaaagaaatgaagaagccatattttctcttctcc |
17978582 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 17264943 - 17264875
Alignment:
| Q |
123 |
acccattaattttgtgaaaataccataatacccctgagttatttttaatattactgccatgccactcac |
191 |
Q |
| |
|
||||||| |||||||||||| || ||||||||| ||| || ||||||||||||| |||||||||||| |
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| T |
17264943 |
acccatttattttgtgaaaagactataatacccttgaagtaattttaatattactatcatgccactcac |
17264875 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 271
Target Start/End: Complemental strand, 29522607 - 29522465
Alignment:
| Q |
123 |
acccattaattttgtgaaaataccataatacccctgagttatttttaatattactgccatgccactcactcacccacatccctcccactctcattgccgg |
222 |
Q |
| |
|
||||||| ||||||||||||||| ||||| |||||| ||| ||||||||||||| |||||||||||| | ||| | ||||||||| ||| | |
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| T |
29522607 |
acccatttattttgtgaaaatactataatgcccctggattaattttaatattactaccatgccactca---aacca---ctatcccactctaattccaat |
29522514 |
T |
|
| Q |
223 |
ttttctccagaaccggaaagaaaagaacaagccatattttctcttctcc |
271 |
Q |
| |
|
|||||||||||| ||||||||| ||| |||| |||||||||||||||| |
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| T |
29522513 |
atttctccagaacgggaaagaaacgaagaagcaatattttctcttctcc |
29522465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 191
Target Start/End: Complemental strand, 36620223 - 36620156
Alignment:
| Q |
124 |
cccattaattttgtgaaaataccataatacccctgagttatttttaatattactgccatgccactcac |
191 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| | || || ||| |||||||| || |||||| |||| |
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| T |
36620223 |
cccattaattttgtgaaattaccataatacccttaagctaatttgaatattacagctatgccattcac |
36620156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 22460494 - 22460431
Alignment:
| Q |
123 |
acccattaattttgtgaaaataccataatacccctgagttatttttaatattactgccatgcca |
186 |
Q |
| |
|
||||||| |||||||||||| || ||||||||| ||||||| |||||||||||||| ||||||| |
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| T |
22460494 |
acccatttattttgtgaaaagactataatacccatgagttaattttaatattactgtcatgcca |
22460431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 6253774 - 6253843
Alignment:
| Q |
123 |
acccattaattttgtgaaaataccataatacccctgagttatttttaatattactgccatgccactcact |
192 |
Q |
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||||||| ||| ||||||||||||||| | ||| ||||||| ||||||||||||| ||||||||||||| |
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| T |
6253774 |
acccatttattctgtgaaaataccatattgcccttgagttaattttaatattactatcatgccactcact |
6253843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 177
Target Start/End: Complemental strand, 10895614 - 10895560
Alignment:
| Q |
123 |
acccattaattttgtgaaaataccataatacccctgagttatttttaatattact |
177 |
Q |
| |
|
||||||| ||| |||||||| || |||||||||||||| || ||||||||||||| |
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|
| T |
10895614 |
acccatttattctgtgaaaagactataatacccctgaggtaattttaatattact |
10895560 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 26091863 - 26091907
Alignment:
| Q |
137 |
tgaaaataccataatacccctgagttatttttaatattactgccat |
182 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||| |||||||| |
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| T |
26091863 |
tgaaaataccataatacccctg-gttaattttaatatcactgccat |
26091907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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