View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20664_low_17 (Length: 292)
Name: NF20664_low_17
Description: NF20664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20664_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 124 - 277
Target Start/End: Complemental strand, 2493795 - 2493642
Alignment:
| Q |
124 |
agttgatggtactaggagtgttagttcttggaattggttactgttctgaaatttttctgatgctggcttgcttgtacgtgtggaaatgtttgatatgatt |
223 |
Q |
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| T |
2493795 |
agttgatggtactaggagtgttagttcttggaattggttactgttctgaaatttttctgatgctggcttgcttgtacgtgtggaaatgtttgatatgatt |
2493696 |
T |
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| Q |
224 |
taatttaattttctctgttcattgttcagttttattttgtttgagagtgaaatt |
277 |
Q |
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| T |
2493695 |
taatttaattttctctgttcattgttcagttttattttgtttgaaagtgaaatt |
2493642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 2493911 - 2493871
Alignment:
| Q |
12 |
atcacctttgttaacatttttagatatgatcaagttaaggg |
52 |
Q |
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| T |
2493911 |
atcacctttgttaacatttttagatatgatcaagttaaggg |
2493871 |
T |
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