View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20664_low_2 (Length: 569)

Name: NF20664_low_2
Description: NF20664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20664_low_2
NF20664_low_2
[»] chr3 (23 HSPs)
chr3 (80-555)||(50507534-50508008)
chr3 (9-81)||(50509692-50509764)
chr3 (186-357)||(23483133-23483312)
chr3 (186-357)||(31608195-31608374)
chr3 (236-333)||(18167934-18168031)
chr3 (187-329)||(24989750-24989896)
chr3 (200-305)||(41589409-41589509)
chr3 (200-292)||(33393118-33393209)
chr3 (227-292)||(47097654-47097720)
chr3 (382-424)||(5218975-5219017)
chr3 (382-424)||(10049200-10049242)
chr3 (382-424)||(10471439-10471481)
chr3 (382-424)||(13286932-13286974)
chr3 (382-424)||(24348805-24348847)
chr3 (382-424)||(26229374-26229416)
chr3 (382-424)||(28555252-28555294)
chr3 (382-424)||(35846749-35846791)
chr3 (382-424)||(37126716-37126758)
chr3 (382-424)||(47697770-47697812)
chr3 (382-424)||(48458388-48458430)
chr3 (382-424)||(51167262-51167304)
chr3 (382-424)||(51754425-51754467)
chr3 (387-423)||(9116495-9116531)
[»] chr8 (26 HSPs)
chr8 (80-338)||(1848357-1848629)
chr8 (115-330)||(32910916-32911140)
chr8 (200-348)||(39713255-39713406)
chr8 (200-351)||(4006425-4006591)
chr8 (234-357)||(35979366-35979490)
chr8 (234-315)||(43576177-43576258)
chr8 (227-292)||(7969381-7969447)
chr8 (200-351)||(44704007-44704173)
chr8 (112-168)||(44953554-44953610)
chr8 (382-425)||(16584424-16584467)
chr8 (382-424)||(5458262-5458304)
chr8 (382-424)||(8352382-8352424)
chr8 (382-424)||(20818957-20818999)
chr8 (382-424)||(25487304-25487346)
chr8 (382-424)||(27719244-27719286)
chr8 (382-424)||(29997496-29997538)
chr8 (382-424)||(31097517-31097559)
chr8 (382-424)||(33411047-33411089)
chr8 (382-424)||(35393601-35393643)
chr8 (382-424)||(36781654-36781696)
chr8 (382-424)||(38098864-38098906)
chr8 (227-357)||(38167778-38167916)
chr8 (382-424)||(45084247-45084289)
chr8 (382-423)||(30655004-30655045)
chr8 (392-436)||(32911201-32911245)
chr8 (112-172)||(35979556-35979616)
[»] chr4 (16 HSPs)
chr4 (186-425)||(15506388-15506634)
chr4 (186-314)||(7818269-7818405)
chr4 (234-357)||(1536828-1536950)
chr4 (200-357)||(37829587-37829759)
chr4 (200-351)||(20292593-20292759)
chr4 (287-333)||(42130988-42131034)
chr4 (244-314)||(7795197-7795268)
chr4 (382-424)||(3875708-3875750)
chr4 (382-424)||(17445703-17445745)
chr4 (382-424)||(27767678-27767720)
chr4 (382-424)||(35949545-35949587)
chr4 (382-424)||(54202333-54202375)
chr4 (382-424)||(56162476-56162518)
chr4 (382-423)||(36309046-36309087)
chr4 (382-423)||(50621666-50621707)
chr4 (376-424)||(39677742-39677790)
[»] chr7 (17 HSPs)
chr7 (186-357)||(41469499-41469679)
chr7 (263-348)||(40524823-40524908)
chr7 (126-331)||(34012732-34012941)
chr7 (146-331)||(21202959-21203152)
chr7 (254-351)||(37544872-37544970)
chr7 (112-172)||(37544791-37544851)
chr7 (382-424)||(3112162-3112204)
chr7 (382-424)||(9741313-9741355)
chr7 (367-424)||(12848443-12848501)
chr7 (382-424)||(18676843-18676885)
chr7 (382-424)||(31588005-31588047)
chr7 (382-424)||(42697409-42697451)
chr7 (382-424)||(44508506-44508548)
chr7 (382-424)||(47455053-47455095)
chr7 (263-304)||(22114119-22114160)
chr7 (263-304)||(40525281-40525322)
chr7 (376-424)||(12726299-12726347)
[»] chr6 (21 HSPs)
chr6 (185-333)||(17314864-17315020)
chr6 (227-335)||(6675217-6675324)
chr6 (244-331)||(26947181-26947268)
chr6 (228-351)||(29880728-29880859)
chr6 (278-332)||(26181103-26181157)
chr6 (254-318)||(14253136-14253201)
chr6 (196-305)||(7082108-7082225)
chr6 (296-351)||(32173000-32173055)
chr6 (382-424)||(4169667-4169709)
chr6 (382-424)||(4210396-4210438)
chr6 (382-424)||(5545374-5545416)
chr6 (382-424)||(8658990-8659032)
chr6 (196-226)||(8810218-8810248)
chr6 (382-424)||(11590249-11590291)
chr6 (382-424)||(17595951-17595993)
chr6 (382-424)||(25144162-25144204)
chr6 (382-424)||(32938488-32938530)
chr6 (382-424)||(33489795-33489837)
chr6 (293-335)||(33659676-33659718)
chr6 (382-426)||(742938-742982)
chr6 (382-422)||(13889151-13889191)
[»] chr2 (12 HSPs)
chr2 (227-440)||(35006313-35006524)
chr2 (227-305)||(31639864-31639942)
chr2 (296-351)||(16312899-16312954)
chr2 (382-424)||(11124415-11124457)
chr2 (382-424)||(17977829-17977871)
chr2 (382-424)||(19390653-19390695)
chr2 (382-424)||(20115064-20115106)
chr2 (382-424)||(21867065-21867107)
chr2 (382-424)||(30787225-30787267)
chr2 (200-305)||(40658629-40658729)
chr2 (80-109)||(35006196-35006225)
chr2 (382-423)||(39430341-39430382)
[»] chr1 (23 HSPs)
chr1 (227-424)||(45926102-45926300)
chr1 (254-334)||(9263495-9263576)
chr1 (263-329)||(51547072-51547138)
chr1 (200-305)||(24527073-24527173)
chr1 (200-357)||(14289555-14289719)
chr1 (200-305)||(32117385-32117497)
chr1 (296-357)||(1702569-1702630)
chr1 (227-305)||(45942122-45942200)
chr1 (200-292)||(3486344-3486435)
chr1 (382-424)||(11335670-11335712)
chr1 (382-424)||(11493690-11493732)
chr1 (382-424)||(13556078-13556120)
chr1 (382-424)||(17926272-17926314)
chr1 (382-424)||(25730002-25730044)
chr1 (382-424)||(25828678-25828720)
chr1 (382-424)||(26770207-26770249)
chr1 (382-424)||(37094234-37094276)
chr1 (382-424)||(40359668-40359710)
chr1 (382-424)||(48542634-48542676)
chr1 (382-424)||(50490804-50490846)
chr1 (382-424)||(52469515-52469557)
chr1 (263-304)||(51546644-51546685)
chr1 (384-424)||(3994953-3994993)
[»] scaffold0570 (1 HSPs)
scaffold0570 (186-357)||(3802-3981)
[»] chr5 (7 HSPs)
chr5 (265-357)||(6733389-6733480)
chr5 (227-305)||(18522729-18522807)
chr5 (382-424)||(3390914-3390956)
chr5 (382-424)||(8935969-8936011)
chr5 (382-424)||(15472749-15472791)
chr5 (382-424)||(33570152-33570194)
chr5 (382-424)||(35066126-35066168)
[»] scaffold0562 (1 HSPs)
scaffold0562 (382-424)||(6527-6569)
[»] scaffold0189 (1 HSPs)
scaffold0189 (382-424)||(27894-27936)


Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 80 - 555
Target Start/End: Complemental strand, 50508008 - 50507534
Alignment:
Q  80 ttaagttaacctcaacaatgtaaattaacgcttgcgtgttgcaccatcaaataactgtcattgcacagtgcataacatatcaatgttgaacaataacnnn 179  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||       
T  50508008 ttaagttaacctcaacaatttaaattaacgcttgcgtgttgcaccatcaaataactgtcattgcactgtgcataacatatcaatgttgaacaataacaaa 50507909  T
Q  180 nnnnttgaaactctaacatcattgaaaaagaagaagaaattcacttagcaatcaagtatggataaaagatgttatgattcacttttaatcttctacaaag 279  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  50507908 aaaattgaaactctaacatcattgaaaaagaagaagaaattcacttagcaatcaagtatggatgaaagatgttatgattcacttttaatcttctacaaag 50507809  T
Q  280 attgattgaacattcatgattgtttgtgggtgaaagaggatgaaattttagagtgataattaattaaatcaaagttttnnnnnnnnnttatatgaaaggg 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||         |||||||||||||    
T  50507808 attgattgaacattcatgattgtttgtgggtgaaagaggatgaaattttagagtgataattaatgaaatcaaagtttt-aaaaaaaattatatgaaaggg 50507710  T
Q  380 ttattttggtactattgtaaaatattaagtaaatttgggtgtaacctaaaatacatgaggttaaaagaaaaattcttatgacattggtaaaatattattc 479  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  50507709 ttattttggtactattgtaaaatattaagtaaatttgggtgtaacctaaaatacatggggttaaaagaaaaattcttatgacattggtaaaatattattc 50507610  T
Q  480 ggaccatatcttataattatgattatgatagcggatattttatttatttatgccaaaatattgctatgggttttat 555  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50507609 ggatcatatcttataattatgattatgatagcggatattttatttatttatgccaaaatattgctatgggttttat 50507534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 50509764 - 50509692
Alignment:
Q  9 agcagagacattgggattaagagagaggccatgttatggcttgggaaattagatcgcaagttagtggtggatt 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50509764 agcagagacattgggattaagagagaggccatgttatggcttgggaaattagatcgcaagttagtggtggatt 50509692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 186 - 357
Target Start/End: Original strand, 23483133 - 23483312
Alignment:
Q  186 gaaactctaacatcattgaaaaagaagaagaaattcactta-------gcaatcaagtatggataaaagatgttatgattcact-tttaatcttctacaa 277  Q
    ||||||||| ||||| ||||||||||||||||||||| |||       |||||  ||||||||  ||||||||| ||||||||| |||||||||||| |     
T  23483133 gaaactctagcatcaatgaaaaagaagaagaaattcaattatttatatgcaatagagtatggacgaaagatgttttgattcactctttaatcttctatat 23483232  T
Q  278 agattgattgaacattcatgattgtttgtgggtgaaagaggatgaaattttagagtgataattaattaaatcaaagtttt 357  Q
    ||||||||||| ||| ||| |||||||||||| ||||| || |||||||||||||||| ||| ||| ||||||| |||||    
T  23483233 agattgattgaccatccataattgtttgtgggggaaagcgggtgaaattttagagtgacaatgaatgaaatcaaggtttt 23483312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 186 - 357
Target Start/End: Original strand, 31608195 - 31608374
Alignment:
Q  186 gaaactctaacatcattgaaaaagaagaagaaattcactta-------gcaatcaagtatggataaaagatgttatgattcact-tttaatcttctacaa 277  Q
    ||||||||| |||||||| ||||||||||||||||||||||       ||||| |||||||||| ||||||| | ||||| | | |||||||||||| |     
T  31608195 gaaactctagcatcattggaaaagaagaagaaattcacttacttatatgcaataaagtatggatgaaagatgctttgatttattctttaatcttctatag 31608294  T
Q  278 agattgattgaacattcatgattgtttgtgggtgaaagaggatgaaattttagagtgataattaattaaatcaaagtttt 357  Q
    ||||||||||||||| ||||||||||  |||||||||||   ||||||||||||| |||||| ||| ||||||| |||||    
T  31608295 agattgattgaacatccatgattgttcctgggtgaaagatagtgaaattttagagcgataatgaatgaaatcaaggtttt 31608374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 236 - 333
Target Start/End: Complemental strand, 18168031 - 18167934
Alignment:
Q  236 tatggataaaagatgttatgattcacttttaatcttctacaaagattgattgaacattcatgattgtttgtgggtgaaagaggatgaaattttagagt 333  Q
    ||||||| ||||||| | |||||||||||||||||| || | | ||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||    
T  18168031 tatggatgaaagatgctttgattcacttttaatcttttatataaattgattgaacatccatgattctttgtgggtgaaagagggtgaaattttagagt 18167934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 187 - 329
Target Start/End: Complemental strand, 24989896 - 24989750
Alignment:
Q  187 aaactctaacatcattgaaaaagaagaagaaattcacttagcaat---caagtatggataaaagatgttatgattcact-tttaatcttctacaaagatt 282  Q
    |||||| | ||||||||||||||||||||||||| |||||   ||   ||||||| | | ||||||| | ||||| ||| |||||||||||| | |||||    
T  24989896 aaactccagcatcattgaaaaagaagaagaaatttacttacatatatgcaagtatcgttgaaagatgctttgattaactctttaatcttctatagagatt 24989797  T
Q  283 gattgaacattcatgattgtttgtgggtgaaagaggatgaaatttta 329  Q
    ||||||||||  ||||||||| ||| ||||||| |||||||||||||    
T  24989796 gattgaacatctatgattgttcgtgagtgaaagtggatgaaatttta 24989750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 200 - 305
Target Start/End: Original strand, 41589409 - 41589509
Alignment:
Q  200 attgaaaaagaagaagaaattcacttagcaatcaagtatggataaaagatgttatgattcact-tttaatcttctacaaagattgattgaacattcatga 298  Q
    ||||||||||||||||||||||     ||| || ||||||||| ||||||||| ||||||||| |||||||||| | | |||||||||||||| ||| ||    
T  41589409 attgaaaaagaagaagaaattc-----gcagtcgagtatggatgaaagatgttttgattcactctttaatcttccatagagattgattgaaca-tcagga 41589502  T
Q  299 ttgtttg 305  Q
    |||||||    
T  41589503 ttgtttg 41589509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 292
Target Start/End: Original strand, 33393118 - 33393209
Alignment:
Q  200 attgaaaaagaagaagaaattcacttagcaatcaagtatggataaaagatgttatgattcact-tttaatcttct---acaaagattgattgaacat 292  Q
    ||||||||||||||||||||||     |||||| ||||||||| ||| ||||| ||||||||| |||||||||||   ||| |||||||||||||||    
T  33393118 attgaaaaagaagaagaaattc-----gcaatcgagtatggatgaaaaatgttttgattcactctttaatcttctataacagagattgattgaacat 33393209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 292
Target Start/End: Complemental strand, 47097720 - 47097654
Alignment:
Q  227 gcaatcaagtatggataaaagatgttatgattcact-tttaatcttctacaaagattgattgaacat 292  Q
    |||||||||||||||| |||| |||| ||||||| | |||||||||| | |||||||||||||||||    
T  47097720 gcaatcaagtatggatgaaaggtgttttgattcattctttaatcttccataaagattgattgaacat 47097654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 5219017 - 5218975
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  5219017 attttggtattattgtaaaattttaaataaatttgggtgtaac 5218975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 10049200 - 10049242
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  10049200 attttggtattattgtaaaattttaaataaatttgggtgtaac 10049242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 10471439 - 10471481
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  10471439 attttggtattattgtaaaattttaaataaatttgggtgtaac 10471481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 13286974 - 13286932
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  13286974 attttggtattattgtaaaattttaaataaatttgggtgtaac 13286932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 24348847 - 24348805
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  24348847 attttggtattattgtaaaattttaaataaatttgggtgtaac 24348805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 26229416 - 26229374
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  26229416 attttggtattattgtaaaattttaaataaatttgggtgtaac 26229374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 28555252 - 28555294
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  28555252 attttggtattattgtaaaattttaaataaatttgggtgtaac 28555294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 35846791 - 35846749
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  35846791 attttggtattattgtaaaattttaaataaatttgggtgtaac 35846749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 37126716 - 37126758
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  37126716 attttggtattattgtaaaattttaaataaatttgggtgtaac 37126758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 47697812 - 47697770
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  47697812 attttggtattattgtaaaattttaaataaatttgggtgtaac 47697770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 48458430 - 48458388
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  48458430 attttggtattattgtaaaattttaaataaatttgggtgtaac 48458388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 51167262 - 51167304
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  51167262 attttggtattattgtaaaattttaaataaatttgggtgtaac 51167304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 51754467 - 51754425
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  51754467 attttggtattattgtaaaattttaaataaatttgggtgtaac 51754425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 423
Target Start/End: Original strand, 9116495 - 9116531
Alignment:
Q  387 ggtactattgtaaaatattaagtaaatttgggtgtaa 423  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  9116495 ggtattattgtaaaattttaagtaaatttgggtgtaa 9116531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 80 - 338
Target Start/End: Complemental strand, 1848629 - 1848357
Alignment:
Q  80 ttaagttaacctcaacaatgtaaattaa------cgcttgcgtgttgcaccatcaaataactgtcattgcacagtgcataacatatcaatgttgaacaat 173  Q
    |||||||||||||||| |||||||||||      ||| || |||||||||||||||||||| ||| ||| | || || ||||||||||| |||||||||     
T  1848629 ttaagttaacctcaacgatgtaaattaatgttaacgcatgtgtgttgcaccatcaaataaccgtcgttgtaaagggcgtaacatatcaacgttgaacaac 1848530  T
Q  174 aacnnnnnnnttgaaactctaacatcattgaaaaagaagaagaaattcactta-------gcaatcaagtatggataaaagatgttatgattcact-ttt 265  Q
    ||         |||||||||| ||||||||||||||||||||||| ||| |||       |||||||||||||||| ||| ||||| |||| |||| |||    
T  1848529 aagataaaaaatgaaactctagcatcattgaaaaagaagaagaaactcatttacttatatgcaatcaagtatggatgaaatatgttttgatccactcttt 1848430  T
Q  266 aatcttctacaaagattgattgaacattcatgattgtttgtgggtgaaagaggatgaaattttagagtgataa 338  Q
    ||||||||| ||| ||||||||||||| ||||||||| || || ||||||||| |||| ||||| ||||||||    
T  1848429 aatcttctataaatattgattgaacatccatgattgtctgcggatgaaagagggtgaagttttaaagtgataa 1848357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 115 - 330
Target Start/End: Original strand, 32910916 - 32911140
Alignment:
Q  115 gtgttgcaccatcaaataactgtcattgcacagtgcataacatatcaatgttgaacaataacnnnnnnnttgaaactctaacatcattgaaaaagaagaa 214  Q
    |||||||||||||||||||| ||||| | | ||| ||||||||||||||||||||||| ||        | ||||||| |||||||||||| |  |||||    
T  32910916 gtgttgcaccatcaaataaccgtcatcgtagagttcataacatatcaatgttgaacaacaa-gaaaaaatagaaactcaaacatcattgaatataaagaa 32911014  T
Q  215 gaaattcactta-------gcaatcaagtatggataaaagatgttatgattca---cttttaatcttctacaaagattgattgaacattcatgattgttt 304  Q
    ||||||||||||       |||||  |||||| || ||||||||| |||||||    ||||||| || |    |||||||||||||||  ||||||||||    
T  32911015 gaaattcacttacttatatgcaatagagtatgaatgaaagatgttttgattcattttttttaattttttgtcgagattgattgaacatcgatgattgttt 32911114  T
Q  305 gtgggtgaaagaggatgaaattttag 330  Q
     ||| |||||||| ||||||||||||    
T  32911115 ttggatgaaagagaatgaaattttag 32911140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 200 - 348
Target Start/End: Original strand, 39713255 - 39713406
Alignment:
Q  200 attgaaaaagaagaagaaattcacttagcaatcaagtatggataaaagatgttatgattcact-tttaatcttctacaaagattgattgaacattcatga 298  Q
    ||||||||||||||||||||||     |||||| ||||||||| ||||||||| ||||||||| |||||||||| | |   |||||||||||| ||||||    
T  39713255 attgaaaaagaagaagaaattc-----gcaatcgagtatggatgaaagatgttttgattcactctttaatcttccataggaattgattgaaca-tcatga 39713348  T
Q  299 tt--------gtttgtgggtgaaagaggatgaaattttagagtgataattaattaaat 348  Q
    ||        |||||||||||||||||  |||||||||||||||| ||||||| ||||    
T  39713349 ttgtttgatcgtttgtgggtgaaagagattgaaattttagagtgacaattaatgaaat 39713406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 200 - 351
Target Start/End: Original strand, 4006425 - 4006591
Alignment:
Q  200 attgaaaaagaagaagaaattcactta-------gcaatcaagtatggataaaagatgttatgattcact-tttaatcttctacaaagattgattgaaca 291  Q
    ||||||||||||||| |||||||||||       |||||| |||||| || ||||||||| ||||||||| |||||||||| |   ||||| ||||||||    
T  4006425 attgaaaaagaagaaaaaattcacttatttatatgcaatcgagtatgaatgaaagatgttttgattcactctttaatcttccattgagattaattgaaca 4006524  T
Q  292 ttcatgattgtttg--------tgggtgaaagaggatgaaattttagagtgataattaattaaatcaa 351  Q
    | ||||||||||||        ||||||||||||  |||||||||||||||| ||||||| |||||||    
T  4006525 t-catgattgtttgatcgttggtgggtgaaagagagtgaaattttagagtgacaattaatgaaatcaa 4006591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 234 - 357
Target Start/End: Complemental strand, 35979490 - 35979366
Alignment:
Q  234 agtatggataaaagatgttatgattcact-tttaatcttctacaaagattgattgaacattcatgattgtttgtgggtgaaagaggatgaaattttagag 332  Q
    ||||||||| |||||| || ||||||| | ||||||||| |  | ||||||||||||||| ||||||| |||||||||| || ||| |||||||||||||    
T  35979490 agtatggatgaaagatattttgattcagtctttaatcttttttagagattgattgaacatccatgattatttgtgggtgtaaaagggtgaaattttagag 35979391  T
Q  333 tgataattaattaaatcaaagtttt 357  Q
      | ||| ||| ||||||| |||||    
T  35979390 caacaatgaatgaaatcaaggtttt 35979366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 315
Target Start/End: Complemental strand, 43576258 - 43576177
Alignment:
Q  234 agtatggataaaagatgttatgattcacttttaatcttctacaaagattgattgaacattcatgattgtttgtgggtgaaag 315  Q
    ||||||||| ||||||||| ||||||||||||| | || ||   |||||| |||||||| ||||||||||||||| ||||||    
T  43576258 agtatggatgaaagatgttttgattcacttttattattttatggagattggttgaacatccatgattgtttgtggatgaaag 43576177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 292
Target Start/End: Complemental strand, 7969447 - 7969381
Alignment:
Q  227 gcaatcaagtatggataaaagatgttatgattcact-tttaatcttctacaaagattgattgaacat 292  Q
    |||||||||||||||| ||||| ||| ||||||||| |||||||||| | | |||||||||||||||    
T  7969447 gcaatcaagtatggatgaaagaagttttgattcactctttaatcttccatagagattgattgaacat 7969381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 351
Target Start/End: Complemental strand, 44704173 - 44704007
Alignment:
Q  200 attgaaaaagaagaagaaattcactta-------gcaatcaagtatggataaaagatgttatgattcact-tttaatcttctacaaagattgattgaaca 291  Q
    ||||||||||||||| |||||||||||       ||||||  ||||| || ||||||||| |||||| || |||||||||| | | ||||| ||||||||    
T  44704173 attgaaaaagaagaaaaaattcacttatttatatgcaatcgggtatgaatgaaagatgttttgattcgctctttaatcttccatagagattaattgaaca 44704074  T
Q  292 ttcatgattgtttg--------tgggtgaaagaggatgaaattttagagtgataattaattaaatcaa 351  Q
    | || |||||||||        ||||||||||||  |||||||||||||||||||| ||| |||||||    
T  44704073 t-caggattgtttggtcgttggtgggtgaaagagagtgaaattttagagtgataatgaatgaaatcaa 44704007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 44953554 - 44953610
Alignment:
Q  112 tgcgtgttgcaccatcaaataactgtcattgcacagtgcataacatatcaatgttga 168  Q
    ||||||||||||||||||||||| ||| ||| | ||| ||||||||||||| |||||    
T  44953554 tgcgtgttgcaccatcaaataaccgtcgttgtaaagttcataacatatcaacgttga 44953610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 425
Target Start/End: Complemental strand, 16584467 - 16584424
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaacc 425  Q
    ||||||||| |||| |||||| ||||||||||||||||||||||    
T  16584467 attttggtattattataaaattttaagtaaatttgggtgtaacc 16584424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 5458304 - 5458262
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  5458304 attttggtattattgtaaaattttaaataaatttgggtgtaac 5458262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 8352424 - 8352382
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  8352424 attttggtattattgtaaaattttaaataaatttgggtgtaac 8352382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 20818999 - 20818957
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  20818999 attttggtattattgtaaaattttaaataaatttgggtgtaac 20818957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 25487304 - 25487346
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  25487304 attttggtattattgtaaaattttaaataaatttgggtgtaac 25487346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 27719286 - 27719244
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  27719286 attttggtattattgtaaaattttaaataaatttgggtgtaac 27719244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 29997538 - 29997496
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  29997538 attttggtattattgtaaaattttaaataaatttgggtgtaac 29997496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 31097559 - 31097517
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  31097559 attttggtattattgtaaaattttaaataaatttgggtgtaac 31097517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 33411089 - 33411047
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  33411089 attttggtattattgtaaaattttaaataaatttgggtgtaac 33411047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 35393601 - 35393643
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  35393601 attttggtattattgtaaaattttaaataaatttgggtgtaac 35393643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 36781696 - 36781654
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  36781696 attttggtattattgtaaaattttaaataaatttgggtgtaac 36781654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 38098864 - 38098906
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  38098864 attttggtattattgtaaaattttaaataaatttgggtgtaac 38098906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 357
Target Start/End: Complemental strand, 38167916 - 38167778
Alignment:
Q  227 gcaatcaagtatggataaaagatgttatgattcact-tttaatcttctacaaagattgattgaacattcatgattgtttg--------tgggtgaaagag 317  Q
    |||||| |||||| || ||||||||| ||||| ||| |||||||||| | | ||||| ||||||||| || |||||||||        ||||||||||||    
T  38167916 gcaatcgagtatgaatgaaagatgttttgattgactctttaatcttccatagagattaattgaacat-caggattgtttgatcgttggtgggtgaaagag 38167818  T
Q  318 gatgaaattttagagtgataattaattaaatcaaagtttt 357  Q
      |||||||||||||||| ||| ||| |||||||| ||||    
T  38167817 agtgaaattttagagtgacaatgaatgaaatcaaattttt 38167778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 45084289 - 45084247
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  45084289 attttggtattattgtaaaattttaaataaatttgggtgtaac 45084247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 423
Target Start/End: Complemental strand, 30655045 - 30655004
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaa 423  Q
    ||||||||| ||||||||||| |||| |||||||||||||||    
T  30655045 attttggtattattgtaaaattttaaataaatttgggtgtaa 30655004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 436
Target Start/End: Original strand, 32911201 - 32911245
Alignment:
Q  392 tattgtaaaatattaagtaaatttgggtgtaacctaaaatacatg 436  Q
    ||||||||||| ||||||||||||| ||||||||  |||||||||    
T  32911201 tattgtaaaatcttaagtaaatttgtgtgtaaccataaatacatg 32911245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 35979616 - 35979556
Alignment:
Q  112 tgcgtgttgcaccatcaaataactgtcattgcacagtgcataacatatcaatgttgaacaa 172  Q
    ||||||||||||||||||||| |  | |||| | ||| ||||||||||||| |||||||||    
T  35979616 tgcgtgttgcaccatcaaatagccttgattgtagagttcataacatatcaacgttgaacaa 35979556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 186 - 425
Target Start/End: Original strand, 15506388 - 15506634
Alignment:
Q  186 gaaactctaacatcattgaaaaagaagaagaaattcactta-------gcaatcaagtatggataaaagatgttatgattcact-tttaatcttctacaa 277  Q
    ||||||||| ||||||||||||||||||||||||||| |||       |||||  |||||| || ||||||||| ||||||||| |||||||||||| ||    
T  15506388 gaaactctagcatcattgaaaaagaagaagaaattcaattacttatatgcaatagagtatgaatgaaagatgttttgattcactctttaatcttctataa 15506487  T
Q  278 agattgattgaacattcatgattgtttgtgggtgaaagagga-tgaaattttagagtgataattaattaaatcaaagttttnnnnnnnnnttatatgaaa 376  Q
    |||||||  ||||||| |||||||||||||||||||| |||| |||||||||||||||| ||| ||| ||||||| |||||         |||||| |||    
T  15506488 agattgaccgaacattaatgattgtttgtgggtgaaa-aggagtgaaattttagagtgacaatgaatgaaatcaatgtttt-aagaaaatttatataaaa 15506585  T
Q  377 gggttattttggtactattgtaaaatattaagtaaatttgggtgtaacc 425  Q
    |||  ||||| ||| |||| |||||| ||||||||||||||||||||||    
T  15506586 gggcaatttttgtattattataaaattttaagtaaatttgggtgtaacc 15506634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 186 - 314
Target Start/End: Original strand, 7818269 - 7818405
Alignment:
Q  186 gaaactctaacatcattgaaaaagaagaagaaattcactta-------gcaatcaagtatggataaaagatgttatgattcact-tttaatcttctacaa 277  Q
    ||||||||| ||||||||||||||||| ||||||||| |||       ||| |  ||||| ||| |||||||||  |||||||| ||||||||| || |     
T  7818269 gaaactctagcatcattgaaaaagaaggagaaattcaattacttatatgcattagagtatagatgaaagatgtttcgattcactctttaatcttttatag 7818368  T
Q  278 agattgattgaacattcatgattgtttgtgggtgaaa 314  Q
    | ||||| |||||||||||||||||||||||||||||    
T  7818369 aaattgactgaacattcatgattgtttgtgggtgaaa 7818405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 234 - 357
Target Start/End: Original strand, 1536828 - 1536950
Alignment:
Q  234 agtatggataaaagatgttatgattcact-tttaatcttctacaaagattgattgaacattcatgattgtttgtgggtgaaagaggatgaaattttagag 332  Q
    ||||||||| ||||||||| | ||||||| ||||||||||||  | |||||||||||||| ||||||| ||||||||||||| ||| |||| ||||||||    
T  1536828 agtatggatgaaagatgttttaattcactctttaatcttctatga-gattgattgaacatccatgatt-tttgtgggtgaaatagggtgaagttttagag 1536925  T
Q  333 tgataattaattaaatcaaagtttt 357  Q
     || ||| ||| |||| || |||||    
T  1536926 cgacaatgaatgaaattaaggtttt 1536950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 357
Target Start/End: Original strand, 37829587 - 37829759
Alignment:
Q  200 attgaaaaagaagaagaaattcactta-------gcaatcaagtatggataaaagatgttatgattcact-tttaatcttctacaaagattgattgaaca 291  Q
    ||||||||||||||| |||||||||||       |||||  |||||| || ||||||||| ||||||||| |||||||||| | | ||||| ||||||||    
T  37829587 attgaaaaagaagaaaaaattcacttatttatatgcaattgagtatgaatgaaagatgttttgattcactctttaatcttccatagagattaattgaaca 37829686  T
Q  292 t--tcat-----gattgtttgtgggtgaaagaggatgaaattttagagtgataattaattaaatcaaagtttt 357  Q
    |  | ||     ||||||| |||||||||||||  |||||||||||||||||||| ||| |||||||| ||||    
T  37829687 tctttattgtttgattgttggtgggtgaaagagagtgaaattttagagtgataatgaatgaaatcaaaatttt 37829759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 351
Target Start/End: Complemental strand, 20292759 - 20292593
Alignment:
Q  200 attgaaaaagaagaagaaattcactta-------gcaatcaagtatggataaaagatgttatgattcact-tttaatcttctacaaagattgattgaaca 291  Q
    ||||||||||||||| |||||||||||       |||||| |||||| || ||||||||| ||||||||| |||||||||| | | ||||| |||||| |    
T  20292759 attgaaaaagaagaaaaaattcacttatttatatgcaatcgagtatgaatgaaagatgttttgattcactctttaatcttccatagagattaattgaata 20292660  T
Q  292 ttcatgattgtttg--------tgggtgaaagaggatgaaattttagagtgataattaattaaatcaa 351  Q
    | || |||||||||        |||||||||||||||| ||||||| ||||||||| ||| |||||||    
T  20292659 t-caggattgtttgatccttggtgggtgaaagaggatggaattttatagtgataatgaatgaaatcaa 20292593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 333
Target Start/End: Complemental strand, 42131034 - 42130988
Alignment:
Q  287 gaacattcatgattgtttgtgggtgaaagaggatgaaattttagagt 333  Q
    |||||||| ||||||||||| ||||||||| ||||||||||||||||    
T  42131034 gaacattcgtgattgtttgtaggtgaaagatgatgaaattttagagt 42130988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 314
Target Start/End: Original strand, 7795197 - 7795268
Alignment:
Q  244 aaagatgttatgattcact-tttaatcttctacaaagattgattgaacattcatgattgtttgtgggtgaaa 314  Q
    |||||||||  |||||||| |||| |||| || | | ||||| |||||||||||||||||||||||||||||    
T  7795197 aaagatgtttcgattcactctttattcttttatagaaattgactgaacattcatgattgtttgtgggtgaaa 7795268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 3875708 - 3875750
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  3875708 attttggtattattgtaaaattttaaataaatttgggtgtaac 3875750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 17445703 - 17445745
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  17445703 attttggtattattgtaaaattttaaataaatttgggtgtaac 17445745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 27767678 - 27767720
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  27767678 attttggtattattgtaaaattttaaataaatttgggtgtaac 27767720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 35949545 - 35949587
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  35949545 attttggtattattgtaaaattttaaataaatttgggtgtaac 35949587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 54202375 - 54202333
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  54202375 attttggtattattgtaaaattttaaataaatttgggtgtaac 54202333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 56162518 - 56162476
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  56162518 attttggtattattgtaaaattttaaataaatttgggtgtaac 56162476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 423
Target Start/End: Original strand, 36309046 - 36309087
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaa 423  Q
    ||||||||| ||||||||||| |||| |||||||||||||||    
T  36309046 attttggtattattgtaaaattttaaataaatttgggtgtaa 36309087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 423
Target Start/End: Complemental strand, 50621707 - 50621666
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaa 423  Q
    ||||||||| ||||||||||| |||| |||||||||||||||    
T  50621707 attttggtattattgtaaaattttaaataaatttgggtgtaa 50621666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 424
Target Start/End: Original strand, 39677742 - 39677790
Alignment:
Q  376 agggttattttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||| ||||||||| ||||||||||| |||| ||||||| ||||||||    
T  39677742 agggtaattttggtattattgtaaaattttaaataaatttaggtgtaac 39677790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 186 - 357
Target Start/End: Complemental strand, 41469679 - 41469499
Alignment:
Q  186 gaaactctaacatcatt-gaaaaagaagaagaaattcactta-------gcaatcaagtatggataaaagatgttatgattcact-tttaatcttctaca 276  Q
    ||||||||| ||||||| ||||||||||||||||||||||||       |||| | | ||||||| ||||||||| ||||||||  |||||||||||| |    
T  41469679 gaaactctagcatcatttgaaaaagaagaagaaattcacttatttatatgcaaccgaatatggatgaaagatgttttgattcaccctttaatcttctata 41469580  T
Q  277 aagattgattgaacattcatgattgtttgtgggtgaaagaggatgaaattttagagtgataattaattaaatcaaagtttt 357  Q
     ||||||||||||||||||| |||||||||  |||||||||| | |||||||||||| | ||| ||| |||||||||||||    
T  41469579 gagattgattgaacattcataattgtttgtatgtgaaagagggtaaaattttagagtaacaatgaatgaaatcaaagtttt 41469499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 263 - 348
Target Start/End: Original strand, 40524823 - 40524908
Alignment:
Q  263 tttaatcttctacaaagattgattgaacattcatgattgtttgtgggtgaaagaggatgaaattttagagtgataattaattaaat 348  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||| | | ||||||||||||| |||||| || |||||    
T  40524823 tttaatcttctacagagattgattgaacatccatgattgtttgtgggtgaaaaatggtgaaattttagagcgataatgaaataaat 40524908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 126 - 331
Target Start/End: Complemental strand, 34012941 - 34012732
Alignment:
Q  126 tcaaataactgtcattgcacagtgcataacatatcaatgttgaacaataacnnnnnnnttgaaactctaacatcattgaaaaagaagaagaaattcactt 225  Q
    ||||||||||||| ||| | ||| ||||||||||||| ||||||||| ||        | ||||||||||||||||||||| | |  || |||   ||||    
T  34012941 tcaaataactgtcgttgtagagttcataacatatcaacgttgaacaacaagaaaaaaatagaaactctaacatcattgaaagaaagaaaaaaacgtactt 34012842  T
Q  226 a---gcaatcaagtatggataaaagatgttatgattcact-tttaatcttctacaaagattgattgaacattcatgattgtttgtgggtgaaagaggatg 321  Q
    |   |||||  | |||||||  |||||||| ||||||||| ||||||||| || | |||||||||||||||  ||||||||||||||||| ||| |||||    
T  34012841 atatgcaatagaatatggatggaagatgttttgattcactctttaatcttttatagagattgattgaacatctatgattgtttgtgggtgtaagcggatg 34012742  T
Q  322 aaattttaga 331  Q
    ||||||||||    
T  34012741 aaattttaga 34012732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 146 - 331
Target Start/End: Complemental strand, 21203152 - 21202959
Alignment:
Q  146 agtgcataacatatcaatgttgaacaataacnnnnnnnttgaaactctaacatcattgaaaaagaagaagaaattcactta-------gcaatcaagtat 238  Q
    ||||||||||||||||| ||||||||| ||        | ||||||||  |||||||||||||||| |||||||||| |||       |||||  |||||    
T  21203152 agtgcataacatatcaacgttgaacaacaagaataaaatagaaactcttgcatcattgaaaaagaataagaaattcaattacttatatgcaatagagtat 21203053  T
Q  239 ggataaaagatgttatgattcact-tttaatcttctacaaagattgattgaacattcatgattgtttgtgggtgaaagaggatgaaattttaga 331  Q
     ||| ||||||||| ||||| | | |||||| ||||| | ||||||||||||| | ||||||||||||||||||||| ||  ||||||||||||    
T  21203052 agatgaaagatgttttgatttattatttaatattctatagagattgattgaacgtccatgattgtttgtgggtgaaatagtgtgaaattttaga 21202959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 254 - 351
Target Start/End: Original strand, 37544872 - 37544970
Alignment:
Q  254 tgattcact-tttaatcttctacaaagattgattgaacattcatgattgtttgtgggtgaaagaggatgaaattttagagtgataattaattaaatcaa 351  Q
    ||||||||| ||||||||| || |  |||||||||||||| ||| ||||||| ||||||||||||| |||||||||||||| | ||| ||| |||||||    
T  37544872 tgattcactctttaatcttttatagtgattgattgaacatccataattgtttatgggtgaaagagggtgaaattttagagtaacaatgaatgaaatcaa 37544970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 37544791 - 37544851
Alignment:
Q  112 tgcgtgttgcaccatcaaataactgtcattgcacagtgcataacatatcaatgttgaacaa 172  Q
    |||||| |||||||||||||||| ||| ||| | ||| ||||||||||||| |||||||||    
T  37544791 tgcgtgctgcaccatcaaataaccgtcgttgtagagttcataacatatcaacgttgaacaa 37544851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 3112162 - 3112204
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  3112162 attttggtattattgtaaaattttaaataaatttgggtgtaac 3112204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 9741313 - 9741355
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  9741313 attttggtattattgtaaaattttaaataaatttgggtgtaac 9741355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 367 - 424
Target Start/End: Complemental strand, 12848501 - 12848443
Alignment:
Q  367 ttatatgaa-agggttattttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||| ||||||||| ||||||||||| |||| ||||||| ||||||||    
T  12848501 ttatatgaagagggtaattttggtattattgtaaaattttaaataaatttaggtgtaac 12848443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 18676843 - 18676885
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  18676843 attttggtattattgtaaaattttaaataaatttgggtgtaac 18676885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 31588005 - 31588047
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  31588005 attttggtattattgtaaaattttaaataaatttgggtgtaac 31588047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 42697451 - 42697409
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  42697451 attttggtattattgtaaaattttaaataaatttgggtgtaac 42697409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 44508548 - 44508506
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  44508548 attttggtattattgtaaaattttaaataaatttgggtgtaac 44508506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 47455095 - 47455053
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  47455095 attttggtattattgtaaaattttaaataaatttgggtgtaac 47455053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 22114119 - 22114160
Alignment:
Q  263 tttaatcttctacaaagattgattgaacattcatgattgttt 304  Q
    |||||||||||| | ||||||||||||||| |||||||||||    
T  22114119 tttaatcttctatagagattgattgaacatccatgattgttt 22114160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 304
Target Start/End: Complemental strand, 40525322 - 40525281
Alignment:
Q  263 tttaatcttctacaaagattgattgaacattcatgattgttt 304  Q
    |||||||||||| | ||||||||||||||| |||||||||||    
T  40525322 tttaatcttctatagagattgattgaacatccatgattgttt 40525281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 424
Target Start/End: Original strand, 12726299 - 12726347
Alignment:
Q  376 agggttattttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||| ||||||||| ||||||||||| |||| |||||| |||||||||    
T  12726299 agggtaattttggtattattgtaaaattttaaataaattcgggtgtaac 12726347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 185 - 333
Target Start/End: Original strand, 17314864 - 17315020
Alignment:
Q  185 tgaaactctaacatcattgaaaaagaagaagaaattcactta-------gcaatcaagtatggataaaagatgttatgattcact-tttaatcttctaca 276  Q
    |||||||||  ||||||||||||||||||||||||||| |||       |||||  ||||||||| ||| ||||| ||||||||| ||||||| | || |    
T  17314864 tgaaactcttgcatcattgaaaaagaagaagaaattcagttacttatatgcaatagagtatggatgaaatatgttttgattcactctttaatcctttata 17314963  T
Q  277 aagattgattgaacattcatgattgtttgtgggtgaaagaggatgaaattttagagt 333  Q
    |||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||    
T  17314964 aagattgattgaacattcatgattgtttgtggctgaaagagagtgaaattttagagt 17315020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 227 - 335
Target Start/End: Complemental strand, 6675324 - 6675217
Alignment:
Q  227 gcaatcaagtatggataaaagatgttatgattcact-tttaatcttctacaaagattgattgaacattcatgattgtttgtgggtgaaagaggatgaaat 325  Q
    |||||| ||||||||| ||||||||| ||||||||| |||||||||||| | ||||||||||||||| ||||||| ||||| ||||||||||  | ||||    
T  6675324 gcaatcgagtatggatgaaagatgttttgattcactctttaatcttctatagagattgattgaacatccatgattatttgttggtgaaagag--taaaat 6675227  T
Q  326 tttagagtga 335  Q
    ||||||||||    
T  6675226 tttagagtga 6675217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 331
Target Start/End: Complemental strand, 26947268 - 26947181
Alignment:
Q  244 aaagatgttatgattcactttt-aatcttctacaaagattgattgaacattcatgattgtttgtgggtgaaagaggatgaaattttaga 331  Q
    ||||||||| ||||||||| || ||||||||| | |||||||||||| || ||||||||||||||||||||||||  ||||||||||||    
T  26947268 aaagatgttttgattcactcttcaatcttctatagagattgattgaa-atccatgattgtttgtgggtgaaagagagtgaaattttaga 26947181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 228 - 351
Target Start/End: Complemental strand, 29880859 - 29880728
Alignment:
Q  228 caatcaagtatggataaaagatgttatgattcact-tttaatcttctacaaagattgattgaacattcatgattgtttg--------tgggtgaaagagg 318  Q
    ||||| |||||| |||||||||||| ||||||||| |||||||||| | ||||||| |||||||| ||| |||||||||        ||||||||||||     
T  29880859 caatcgagtatgaataaaagatgttttgattcactctttaatcttccataaagattaattgaaca-tcaggattgtttgatcgttgatgggtgaaagaga 29880761  T
Q  319 atgaaattttagagtgataattaattaaatcaa 351  Q
    ||| ||||||||||||| ||||||| |||||||    
T  29880760 atggaattttagagtgacaattaatgaaatcaa 29880728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 278 - 332
Target Start/End: Complemental strand, 26181157 - 26181103
Alignment:
Q  278 agattgattgaacattcatgattgtttgtgggtgaaagaggatgaaattttagag 332  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||| |||||||    
T  26181157 agattgattgaacattcatgattgtttgtgggtgaaagagagtgaaagtttagag 26181103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 254 - 318
Target Start/End: Complemental strand, 14253201 - 14253136
Alignment:
Q  254 tgattcact-tttaatcttctacaaagattgattgaacattcatgattgtttgtgggtgaaagagg 318  Q
    ||||||||| ||||||||| || | ||||||||||||||| |||||||||||||||||||||||||    
T  14253201 tgattcactctttaatcttttatagagattgattgaacatccatgattgtttgtgggtgaaagagg 14253136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 196 - 305
Target Start/End: Original strand, 7082108 - 7082225
Alignment:
Q  196 catcattgaaaaagaagaagaaattcactta-------gcaatcaagtatggataaaagatgttatgattcact-tttaatcttctacaaagattgattg 287  Q
    |||||||||||||||||||||||||||||||       |||||| ||| ||||| | |||| || ||||||||| |||||||||| |   ||||||||||    
T  7082108 catcattgaaaaagaagaagaaattcacttacttatatgcaatcgagtttggatgagagatattttgattcactctttaatcttccatgtagattgattg 7082207  T
Q  288 aacattcatgattgtttg 305  Q
    |||||  |||||||||||    
T  7082208 aacatggatgattgtttg 7082225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 351
Target Start/End: Complemental strand, 32173055 - 32173000
Alignment:
Q  296 tgattgtttgtgggtgaaagaggatgaaattttagagtgataattaattaaatcaa 351  Q
    ||||||||| ||||||||||||  |||||||||||||||| ||| ||| |||||||    
T  32173055 tgattgtttctgggtgaaagagagtgaaattttagagtgacaatgaatgaaatcaa 32173000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 4169709 - 4169667
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  4169709 attttggtattattgtaaaattttaaataaatttgggtgtaac 4169667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 4210438 - 4210396
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  4210438 attttggtattattgtaaaattttaaataaatttgggtgtaac 4210396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 5545416 - 5545374
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  5545416 attttggtattattgtaaaattttaaataaatttgggtgtaac 5545374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 8659032 - 8658990
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  8659032 attttggtattattgtaaaattttaaataaatttgggtgtaac 8658990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 196 - 226
Target Start/End: Complemental strand, 8810248 - 8810218
Alignment:
Q  196 catcattgaaaaagaagaagaaattcactta 226  Q
    |||||||||||||||||||||||||||||||    
T  8810248 catcattgaaaaagaagaagaaattcactta 8810218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 11590291 - 11590249
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  11590291 attttggtattattgtaaaattttaaataaatttgggtgtaac 11590249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 17595951 - 17595993
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  17595951 attttggtattattgtaaaattttaaataaatttgggtgtaac 17595993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 25144162 - 25144204
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| ||||||||||||| |||||||    
T  25144162 attttggtattattgtaaaattttaagtaaatttgagtgtaac 25144204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 32938488 - 32938530
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  32938488 attttggtattattgtaaaattttaaataaatttgggtgtaac 32938530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 33489837 - 33489795
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  33489837 attttggtattattgtaaaattttaaataaatttgggtgtaac 33489795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 293 - 335
Target Start/End: Complemental strand, 33659718 - 33659676
Alignment:
Q  293 tcatgattgtttgtgggtgaaagaggatgaaattttagagtga 335  Q
    ||||||||| |||||||||||||||| ||||| ||||||||||    
T  33659718 tcatgattgcttgtgggtgaaagaggttgaaagtttagagtga 33659676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 382 - 426
Target Start/End: Original strand, 742938 - 742982
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaacct 426  Q
    ||||||||| ||||||||||| |||| |||||||| |||||||||    
T  742938 attttggtattattgtaaaattttaaataaatttgagtgtaacct 742982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 382 - 422
Target Start/End: Original strand, 13889151 - 13889191
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgta 422  Q
    ||||||||| ||||||||||| |||||||||||| ||||||    
T  13889151 attttggtattattgtaaaattttaagtaaatttaggtgta 13889191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 227 - 440
Target Start/End: Original strand, 35006313 - 35006524
Alignment:
Q  227 gcaatcaagtatggataaaagatgttatgattcactttt-aatcttctacaaagattgattgaacattcatgattgtttgtgggtgaaagaggatgaaat 325  Q
    |||||| | ||| ||| ||||||||| ||||||||| || ||||||||| | ||||||||||||||| ||||||||||||||| ||||||| | ||||||    
T  35006313 gcaatcgaatatagatgaaagatgttttgattcactcttcaatcttctatagagattgattgaacatccatgattgtttgtggatgaaagatggtgaaat 35006412  T
Q  326 tttagagtgataattaattaaatcaaagttttnnnnnnnnnttatatgaaagggttattttggtactattgtaaaatattaagtaaatttgggtgtaacc 425  Q
    |||||||||| ||| ||| |||| || |||||         || ||| ||||||  |||||| || ||||||||| | |||||||||||| |||||||||    
T  35006413 tttagagtgacaatgaatgaaattaaggtttt---gacattttttataaaagggcaattttgatattattgtaaacttttaagtaaatttaggtgtaacc 35006509  T
Q  426 taaaatacatgaggt 440  Q
     ||||||||||||||    
T  35006510 gaaaatacatgaggt 35006524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 227 - 305
Target Start/End: Complemental strand, 31639942 - 31639864
Alignment:
Q  227 gcaatcaagtatggataaaagatgttatgattcact-tttaatcttctacaaagattgattgaacattcatgattgtttg 305  Q
    |||||| ||||||||| ||||||||| ||||||||| |||||||||| | | |||||||||||||| ||| |||||||||    
T  31639942 gcaatcgagtatggatgaaagatgttttgattcactctttaatcttccatagagattgattgaaca-tcaggattgtttg 31639864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 351
Target Start/End: Complemental strand, 16312954 - 16312899
Alignment:
Q  296 tgattgtttgtgggtgaaagaggatgaaattttagagtgataattaattaaatcaa 351  Q
    |||| ||| ||||||||||||| ||||||||||||||||| ||| ||| |||||||    
T  16312954 tgatcgttggtgggtgaaagagaatgaaattttagagtgacaatgaatgaaatcaa 16312899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 11124415 - 11124457
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  11124415 attttggtattattgtaaaattttaaataaatttgggtgtaac 11124457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 17977829 - 17977871
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  17977829 attttggtattattgtaaaattttaaataaatttgggtgtaac 17977871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 19390653 - 19390695
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  19390653 attttggtattattgtaaaattttaaataaatttgggtgtaac 19390695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 20115106 - 20115064
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  20115106 attttggtattattgtaaaattttaaataaatttgggtgtaac 20115064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 21867065 - 21867107
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  21867065 attttggtattattgtaaaattttaaataaatttgggtgtaac 21867107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 30787225 - 30787267
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  30787225 attttggtattattgtaaaattttaaataaatttgggtgtaac 30787267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 200 - 305
Target Start/End: Complemental strand, 40658729 - 40658629
Alignment:
Q  200 attgaaaaagaagaagaaattcacttagcaatcaagtatggataaaagatgttatgattcact-tttaatcttctacaaagattgattgaacattcatga 298  Q
    ||||||||||||||||||||||     ||| |  ||||||||| |||||| || ||||||||| |||||||||| | | |||||||||||||| ||| ||    
T  40658729 attgaaaaagaagaagaaattc-----gcagttgagtatggatgaaagatattttgattcactctttaatcttccatagagattgattgaaca-tcagga 40658636  T
Q  299 ttgtttg 305  Q
    |||||||    
T  40658635 ttgtttg 40658629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 109
Target Start/End: Original strand, 35006196 - 35006225
Alignment:
Q  80 ttaagttaacctcaacaatgtaaattaacg 109  Q
    ||||||||||||||||||||||||||||||    
T  35006196 ttaagttaacctcaacaatgtaaattaacg 35006225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 423
Target Start/End: Original strand, 39430341 - 39430382
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaa 423  Q
    ||||||||| ||||||||||| |||| |||||||||||||||    
T  39430341 attttggtattattgtaaaattttaaataaatttgggtgtaa 39430382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 6e-26; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 227 - 424
Target Start/End: Original strand, 45926102 - 45926300
Alignment:
Q  227 gcaatcaagtatggataaaagatgttatgattcactttt-aatcttctacaaagattgattgaacattcatgattgtttgtgggtgaaagaggatgaaat 325  Q
    |||||| ||||||||| ||||||||| ||||||||| || ||||||||| | ||||||||||||||| |||||||||||| |||||||||||| || |||    
T  45926102 gcaatcgagtatggatgaaagatgttttgattcactcttcaatcttctatagagattgattgaacatacatgattgtttgcgggtgaaagagggtgcaat 45926201  T
Q  326 tttagagtgataat-taattaaatcaaagttttnnnnnnnnnttatatgaaagggttattttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    || ||||||| |||  ||| |||| || |||||         || ||| ||||||| ||||||||| ||||||||| | |||||||||||| ||||||||    
T  45926202 ttgagagtgacaatgaaatgaaattaaggttttaagattttttt-tataaaagggtaattttggtattattgtaaacttttaagtaaatttaggtgtaac 45926300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 254 - 334
Target Start/End: Original strand, 9263495 - 9263576
Alignment:
Q  254 tgattcact-tttaatcttctacaaagattgattgaacattcatgattgtttgtgggtgaaagaggatgaaattttagagtg 334  Q
    ||||||||| |||||| ||||| | ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  9263495 tgattcactctttaatattctatagagattgattgaacattcatgattgtttgtggatgaaagatgatgaaattttagagtg 9263576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 263 - 329
Target Start/End: Complemental strand, 51547138 - 51547072
Alignment:
Q  263 tttaatcttctacaaagattgattgaacattcatgattgtttgtgggtgaaagaggatgaaatttta 329  Q
    |||||||||||| | || |||||||||||| ||| ||||||||||||||||||||| ||||||||||    
T  51547138 tttaatcttctatatagcttgattgaacatccataattgtttgtgggtgaaagagggtgaaatttta 51547072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 200 - 305
Target Start/End: Complemental strand, 24527173 - 24527073
Alignment:
Q  200 attgaaaaagaagaagaaattcacttagcaatcaagtatggataaaagatgttatgattcact-tttaatcttctacaaagattgattgaacattcatga 298  Q
    ||||||||||||||||||||||     ||| || ||||||||| ||||||||| | ||||||| |||||||||| | |||||||||||||||| ||| ||    
T  24527173 attgaaaaagaagaagaaattc-----gcagtcgagtatggatgaaagatgttttaattcactctttaatcttccataaagattgattgaaca-tcagga 24527080  T
Q  299 ttgtttg 305  Q
    |||||||    
T  24527079 ttgtttg 24527073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 200 - 357
Target Start/End: Complemental strand, 14289719 - 14289555
Alignment:
Q  200 attgaaaaagaagaagaaattcactta-------gcaatcaagtatggataaaagatgttatgattcact-tttaatcttctacaaagattgattgaaca 291  Q
    ||||||||||||||| |||||||||||       |||||| |||||| || ||||||||| |||| |||| |||||||||| | | ||||| ||||||||    
T  14289719 attgaaaaagaagaaaaaattcacttatttatatgcaatcgagtatgaatgaaagatgttttgatccactctttaatcttcaatagagattaattgaaca 14289620  T
Q  292 ttcatgattgtttgtgggtgaaagaggatgaaattttagagtgataattaattaaatcaaagtttt 357  Q
    | || ||  ||| |||| ||||||||  || ||||||||||||| ||| ||| |||||||| ||||    
T  14289619 t-caggaacgttggtggatgaaagagagtggaattttagagtgacaataaatgaaatcaaaatttt 14289555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 200 - 305
Target Start/End: Complemental strand, 32117497 - 32117385
Alignment:
Q  200 attgaaaaagaagaagaaattcactta-------gcaatcaagtatggataaaagatgttatgattcact-tttaatcttctacaaagattgattgaaca 291  Q
    ||||||||||||||| |||||||||||       ||||||||||||| || ||||||||| ||||||||| |||||||||| | | ||||| ||||||||    
T  32117497 attgaaaaagaagaaaaaattcacttatttatatgcaatcaagtatgaatgaaagatgttttgattcactctttaatcttccatagagattaattgaaca 32117398  T
Q  292 ttcatgattgtttg 305  Q
     ||| |||||||||    
T  32117397 -tcaggattgtttg 32117385  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 296 - 357
Target Start/End: Original strand, 1702569 - 1702630
Alignment:
Q  296 tgattgtttgtgggtgaaagaggatgaaattttagagtgataattaattaaatcaaagtttt 357  Q
    |||||||| |||||||||||||  |||||||||||||||| ||| ||| |||||||| ||||    
T  1702569 tgattgttggtgggtgaaagagagtgaaattttagagtgacaataaatgaaatcaaaatttt 1702630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 305
Target Start/End: Original strand, 45942122 - 45942200
Alignment:
Q  227 gcaatcaagtatggataaaagatgttatgattcact-tttaatcttctacaaagattgattgaacattcatgattgtttg 305  Q
    |||||| |||||| || ||||||||| ||||||||| |||||||||||| | ||||| |||||||| ||| |||||||||    
T  45942122 gcaatcgagtatgaattaaagatgttttgattcactctttaatcttctatatagattaattgaaca-tcaggattgtttg 45942200  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 200 - 292
Target Start/End: Original strand, 3486344 - 3486435
Alignment:
Q  200 attgaaaaagaagaagaaattcacttagcaatcaagtatggataaaagatgttatgattcact-tttaatcttc---tacaaagattgattgaacat 292  Q
    ||||||||||||||||||||||     |||||| ||||||||| ||| ||||| ||||||||| ||||||||||    ||| |||||||||||||||    
T  3486344 attgaaaaagaagaagaaattc-----gcaatcgagtatggatgaaaaatgttttgattcactctttaatcttccgtaacagagattgattgaacat 3486435  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 11335670 - 11335712
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  11335670 attttggtattattgtaaaattttaaataaatttgggtgtaac 11335712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 11493690 - 11493732
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  11493690 attttggtattattgtaaaattttaaataaatttgggtgtaac 11493732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 13556120 - 13556078
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  13556120 attttggtattattgtaaaattttaaataaatttgggtgtaac 13556078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 17926272 - 17926314
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  17926272 attttggtattattgtaaaattttaaataaatttgggtgtaac 17926314  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 25730002 - 25730044
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  25730002 attttggtattattgtaaaattttaaataaatttgggtgtaac 25730044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 25828720 - 25828678
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  25828720 attttggtattattgtaaaattttaaataaatttgggtgtaac 25828678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 26770207 - 26770249
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  26770207 attttggtattattgtaaaattttaaataaatttgggtgtaac 26770249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 37094234 - 37094276
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  37094234 attttggtattattgtaaaattttaaataaatttgggtgtaac 37094276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 40359710 - 40359668
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  40359710 attttggtattattgtaaaattttaaataaatttgggtgtaac 40359668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 48542634 - 48542676
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  48542634 attttggtattattgtaaaattttaaataaatttgggtgtaac 48542676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 50490846 - 50490804
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  50490846 attttggtattattgtaaaattttaaataaatttgggtgtaac 50490804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 52469515 - 52469557
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  52469515 attttggtattattgtaaaattttaaataaatttgggtgtaac 52469557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 51546644 - 51546685
Alignment:
Q  263 tttaatcttctacaaagattgattgaacattcatgattgttt 304  Q
    |||||||||||| | ||||||||||||||||||| |||||||    
T  51546644 tttaatcttctatagagattgattgaacattcataattgttt 51546685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 424
Target Start/End: Original strand, 3994953 - 3994993
Alignment:
Q  384 tttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||| ||||||||||| |||| ||||||||||||||||    
T  3994953 tttggtattattgtaaaattttaaataaatttgggtgtaac 3994993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 186 - 357
Target Start/End: Complemental strand, 3981 - 3802
Alignment:
Q  186 gaaactctaacatcattgaaaaagaagaagaaattcactta-------gcaatcaagtatggataaaagatgttatgattcactttt-aatcttctacaa 277  Q
    ||||||||  ||||| ||||||||||||||||||||| |||       |||||  ||||||||  |||||| || |||||||||||| ||||||||| |     
T  3981 gaaactcttgcatcaatgaaaaagaagaagaaattcaattatttatatgcaatagagtatggacgaaagatattttgattcactttttaatcttctatag 3882  T
Q  278 agattgattgaacattcatgattgtttgtgggtgaaagaggatgaaattttagagtgataattaattaaatcaaagtttt 357  Q
    ||||||||||| ||| ||| |||||||| || |||||| || |||||||||||||||| ||| ||| ||||||| |||||    
T  3881 agattgattgaccatccataattgtttgcggatgaaagcgggtgaaattttagagtgacaatgaatgaaatcaaggtttt 3802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 9e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 265 - 357
Target Start/End: Original strand, 6733389 - 6733480
Alignment:
Q  265 taatcttctacaaagattgattgaacattcatgattgtttgtgggtgaaagaggatgaaattttagagtgataattaattaaatcaaagtttt 357  Q
    |||||||||| | ||||||||||||||||||| ||| ||||||||||||||| | |||||||||||||||| ||| ||| ||||||| |||||    
T  6733389 taatcttctatagagattgattgaacattcataattatttgtgggtgaaagatg-tgaaattttagagtgacaatgaatgaaatcaaggtttt 6733480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 305
Target Start/End: Original strand, 18522729 - 18522807
Alignment:
Q  227 gcaatcaagtatggataaaagatgttatgattcact-tttaatcttctacaaagattgattgaacattcatgattgtttg 305  Q
    ||||||||||||| || ||||||||| ||||||||| |||||||||| | | ||||| |||||||| ||| |||||||||    
T  18522729 gcaatcaagtatgaatgaaagatgttttgattcactctttaatcttccatatagattaattgaaca-tcaggattgtttg 18522807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 3390914 - 3390956
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  3390914 attttggtattattgtaaaattttaaataaatttgggtgtaac 3390956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 8935969 - 8936011
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  8935969 attttggtattattgtaaaattttaaataaatttgggtgtaac 8936011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 15472749 - 15472791
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  15472749 attttggtattattgtaaaattttaaataaatttgggtgtaac 15472791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 33570152 - 33570194
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  33570152 attttggtattattgtaaaattttaaataaatttgggtgtaac 33570194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 35066126 - 35066168
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  35066126 attttggtattattgtaaaattttaaataaatttgggtgtaac 35066168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0562 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0562
Description:

Target: scaffold0562; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 6527 - 6569
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  6527 attttggtattattgtaaaattttaaataaatttgggtgtaac 6569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 27894 - 27936
Alignment:
Q  382 attttggtactattgtaaaatattaagtaaatttgggtgtaac 424  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  27894 attttggtattattgtaaaattttaaataaatttgggtgtaac 27936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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