View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20664_low_21 (Length: 239)
Name: NF20664_low_21
Description: NF20664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20664_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 35082549 - 35082771
Alignment:
| Q |
1 |
tattgtcaaagtgatattattatataattaatgaaatcacatgaaatgcctcacttgatttgttgaagaagttgaggagttgatgaaataattgttgtta |
100 |
Q |
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| T |
35082549 |
tattgtcgaagtgatattattatataattaatgaaatcacatgaaatgcctcacttgatttgttgaagaagttgaggagttgatgaaataattgttgtta |
35082648 |
T |
|
| Q |
101 |
cttctaggattgaatgctgctgcaccacctctaaacatcatcataggcatgttttcttcggcgaatattctgagtttgttgagctcaggaagcacaattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35082649 |
cttctaggattgaatgctgctgcaccacctctaaacatcatcataggcatgttttcttcggcgaatattctgagtttgttgagctcaggaagcacaattt |
35082748 |
T |
|
| Q |
201 |
ttccaagatcaggtctatctttt |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
35082749 |
ttccaagatcaggtctatctttt |
35082771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 223
Target Start/End: Complemental strand, 42523219 - 42523132
Alignment:
| Q |
136 |
catcatcataggcatgttttcttcggcgaatattctgagtttgttgagctcaggaagcacaatttttccaagatcaggtctatctttt |
223 |
Q |
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||||||||||||||||||||| || || || ||||||||||||||||||||| | | || ||| |||||||||||||| |||||| |
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| T |
42523219 |
catcatcataggcatgttttcatcagcaaaatctctgagtttgttgagctcaggcaaaataactttgccaagatcaggtctgtctttt |
42523132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 223
Target Start/End: Complemental strand, 42531427 - 42531340
Alignment:
| Q |
136 |
catcatcataggcatgttttcttcggcgaatattctgagtttgttgagctcaggaagcacaatttttccaagatcaggtctatctttt |
223 |
Q |
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||||||||||||||||||||| || || || ||||||||||||||||||||| | | || ||| |||||||||||||| |||||| |
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| T |
42531427 |
catcatcataggcatgttttcatcagcaaaatctctgagtttgttgagctcaggcaaaataactttgccaagatcaggtctgtctttt |
42531340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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