View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20664_low_23 (Length: 232)
Name: NF20664_low_23
Description: NF20664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20664_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 39996415 - 39996201
Alignment:
| Q |
3 |
gttgcaacagtgttaataaatgggagcctgatcaacttcctttattgttaggaaattcggataatgttgaagaaaggaagnnnnnnncaacggtggctat |
102 |
Q |
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| T |
39996415 |
gttgtaacagtgttaataaatgggagcctgatcaacttcctttattgttaggaaatttggataatgttgaagaaaggaagaaaaaaacaacggtggctat |
39996316 |
T |
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| Q |
103 |
aatcaacttgagtaaaacacaagttgaaaagttgagaaaaaccgcaaatgagagttggaataaacctagtaatggtcgaggttattcgaggtatgaaaca |
202 |
Q |
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| T |
39996315 |
aatcaacttgagtaaaacacaagttgaaaagttgagaaaaaccgcaaatgagagttggaataaacctagtaatggtcgaggttattcgaggtatgaaaca |
39996216 |
T |
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| Q |
203 |
gtaaccggtcatatt |
217 |
Q |
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||||||||||||||| |
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| T |
39996215 |
gtaaccggtcatatt |
39996201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 214
Target Start/End: Original strand, 53037187 - 53037388
Alignment:
| Q |
13 |
tgttaataaatgggagcctgatcaacttcctttattgttaggaaattcggataatgttgaagaaaggaagnnnnnnncaacggtggctataatcaacttg |
112 |
Q |
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||||||| |||||||| | || ||| ||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||| | || || |
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| T |
53037187 |
tgttaatgaatgggagtttaatgaacctccgttattgttaggaaattcgaataatgttgaagaaaggaagaaaaaaacaacggtggctatgctaaaagtg |
53037286 |
T |
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| Q |
113 |
agtaaaacacaagttgaaaagttgagaaaaaccgcaaatgagagttggaataaacctagtaatggtcgaggttattcgaggtatgaaacagtaaccggtc |
212 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |||||| | |||||||| ||||||||||||||| |||| |||||||| ||||||||| |
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| T |
53037287 |
agtaaaacacaagttgaaaagttgagaaaaacagcaaatgaaagttgggaaaaacctagcaatggtcgaggttatacgagatatgaaaccttaaccggtc |
53037386 |
T |
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| Q |
213 |
at |
214 |
Q |
| |
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|| |
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| T |
53037387 |
at |
53037388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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