View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20664_low_26 (Length: 210)
Name: NF20664_low_26
Description: NF20664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20664_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 85 - 188
Target Start/End: Complemental strand, 1421212 - 1421109
Alignment:
| Q |
85 |
ataatttaatttttaaatcaactagcaaggagaccatccataatagggttcttccctgtataacatcatgttaagtggggttgttcatcatgtagtttag |
184 |
Q |
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| T |
1421212 |
ataatttaatttttaaatcaactagcaaggagaccatccataatagggttcttccctatataacatcatgttaagtggggttgttcatcatgtagtttag |
1421113 |
T |
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| Q |
185 |
atta |
188 |
Q |
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| T |
1421112 |
atta |
1421109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 42 - 188
Target Start/End: Complemental strand, 1414858 - 1414710
Alignment:
| Q |
42 |
taacaactaataagagtaagtataatatcgtttc-acgaggattataatttaatttttaaatcaactagcaaggagaccatccataatagg-gttcttcc |
139 |
Q |
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| T |
1414858 |
taacaagtaataagagtaagtatagtatcgtttccacgagggttatagtttgattgttaaatccactatcaaggagaccatccataagaggagttcttcc |
1414759 |
T |
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| Q |
140 |
ctgtata-acatcatgttaagtggggttgttcatcatgtagtttagatta |
188 |
Q |
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| T |
1414758 |
cc-tatatacatcgtgtaaagtggggttgttcgtcatgtagtttagatta |
1414710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 1421243 - 1421209
Alignment:
| Q |
20 |
atgagcaagtttaatcaaacagtaacaactaataa |
54 |
Q |
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| T |
1421243 |
atgagcaagtttaatcaatcagtaacaactaataa |
1421209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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