View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20664_low_28 (Length: 202)
Name: NF20664_low_28
Description: NF20664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20664_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 1e-98; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 11 - 192
Target Start/End: Complemental strand, 35030250 - 35030069
Alignment:
| Q |
11 |
tttcttatcctttgattctcttcctcatcaccatcaaaacgttttcccattactgtcctaaaaacaacgttaatcgctatgtctgcaaaccattctttca |
110 |
Q |
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| T |
35030250 |
tttcttatcctttgattctcttcctcatcaccatcaaaacgttttcccattactgtcctaaaaacaacgttaatcgctatgtctgcaaaccattctttca |
35030151 |
T |
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| Q |
111 |
tttccgtaaataccctttcagagttaccctgctcgctcttcatcttcaaccaaaatgaataactctctttcatagcttcttc |
192 |
Q |
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| T |
35030150 |
tttccgtaaataccctttcagagttaccctgctcgctcttcatcttcaaccaaaatgaataactctctttcatagcttcttc |
35030069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 35020165 - 35019978
Alignment:
| Q |
1 |
tctaatcatttttcttatcctttgattctcttcctcatcaccatcaaaacgttttcccattactgtcctaaaaacaacgttaatcgctatgtctgcaaac |
100 |
Q |
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| T |
35020165 |
tctaatcatttttcttatcctttgattctcttcctcatcaccatcaaaacgttttcccattactgtcctaaaaacaacgttaatcgctatgtctgcaaac |
35020066 |
T |
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| Q |
101 |
cattctttcatttccgtaaataccctttcagagttaccctgctcgctcttcatcttcaaccaaaatgaataactctctttcatagcttctt |
191 |
Q |
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| T |
35020065 |
cattctttcatttccgtaaataccctttcagagttaccctcat---tcttcatctttaaccaaaatgaataactctctttcatagcttctt |
35019978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 10 - 188
Target Start/End: Complemental strand, 35036355 - 35036180
Alignment:
| Q |
10 |
ttttcttatcctttgattctcttcctcatcaccatcaaaacgttttcccattactgtcctaaaaacaacgttaatcgctatgtctgcaaaccattctttc |
109 |
Q |
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| T |
35036355 |
ttttctaatcctctgattctcttcttcgtcaccatcaaaaactttccccgttaccgttctacacataacgttcatcgctatatcaccaaaccattttttc |
35036256 |
T |
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| Q |
110 |
atttccgtaaataccctttcagagttaccctgctcgctcttcatcttcaaccaaaatgaataactctctttcatagctt |
188 |
Q |
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|||||||||| | |||||||||||||| || |||||||| | | ||||||||| ||||| ||||||||||||| |
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| T |
35036255 |
atttccgtaatagctctttcagagttacc---atcattcttcatccttagccaaaatgagtaactatctttcatagctt |
35036180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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