View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20664_low_3 (Length: 541)
Name: NF20664_low_3
Description: NF20664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20664_low_3 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 286 - 529
Target Start/End: Original strand, 13227794 - 13228037
Alignment:
| Q |
286 |
atggcagaggcaaatagagcttctgcacattttcgttaatccatgagcaggatctatatacacacatagacctatgtatggatccatacataattataat |
385 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13227794 |
atggcagaggcaaatagagcttttgcacattttcgttaatccatgagcagggtctatatacacacatagacctatgtatggatccatacataattataat |
13227893 |
T |
|
| Q |
386 |
tggaaaagaatcaatagaaaaagaatcggaattaatcgatatatctatcgaaacgaaagacgaaatagaaatgatggctcaactaagcacttttggagac |
485 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||| |
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| T |
13227894 |
tggaaaagaatcaatagaaaaagaatcggaattaatcgatatatctatcgaaacgaaagacgaaatagaaatgatggctcaactaaggactttttgggac |
13227993 |
T |
|
| Q |
486 |
ttgcttaagaataaatataaataacgaggaatgtttggtatttt |
529 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13227994 |
ttgcttaagaataaatataaataacgaggaatgtttggtatttt |
13228037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 286 - 410
Target Start/End: Complemental strand, 53883788 - 53883670
Alignment:
| Q |
286 |
atggcagaggcaaatagagcttctgcacattttcgttaatccatgagcaggatctatatacacacatagacctatgtatggatccatacataattataat |
385 |
Q |
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|||||||||||||||||| ||| ||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||| | ||||| |
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| T |
53883788 |
atggcagaggcaaatagatcttttgcacattttcattaatcaatgagcaggatctatacacacacatagacctatgtatggatccatcc------ataat |
53883695 |
T |
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| Q |
386 |
tggaaaagaatcaatagaaaaagaa |
410 |
Q |
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| T |
53883694 |
tggaaaagaatcaatagaaaaagaa |
53883670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 188; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 314 - 529
Target Start/End: Original strand, 47522608 - 47522823
Alignment:
| Q |
314 |
attttcgttaatccatgagcaggatctatatacacacatagacctatgtatggatccatacataattataattggaaaagaatcaatagaaaaagaatcg |
413 |
Q |
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||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
47522608 |
attttcgttaatccatgagtaggatctatgtacacacatagacctatgtatggatccatacataattataattggaaaagaatcgatagaaaaagaatcg |
47522707 |
T |
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| Q |
414 |
gaattaatcgatatatctatcgaaacgaaagacgaaatagaaatgatggctcaactaagcacttttggagacttgcttaagaataaatataaataacgag |
513 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| || |
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| T |
47522708 |
gaattaatcgatatatttatcgaaacgaaagacgaaatagaaatgatggctcaactaaacacttttggggacttgcttaagaataaatataaataaccag |
47522807 |
T |
|
| Q |
514 |
gaatgtttggtatttt |
529 |
Q |
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|||||||||||||||| |
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| T |
47522808 |
gaatgtttggtatttt |
47522823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 286 - 502
Target Start/End: Original strand, 42680126 - 42680336
Alignment:
| Q |
286 |
atggcagaggcaaatagagcttctgcacattttcgttaatccatgagcaggatctatatacacacatagacctatgtatggatccatacataattataat |
385 |
Q |
| |
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|||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
42680126 |
atggcagaagcaaatagagcttttgcacattttcgttaatccatgagtaggatctatatacacacgtagacctatgtatggatccatacataa------t |
42680219 |
T |
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| Q |
386 |
tggaaaagaatcaatagaaaaagaatcggaattaatcgatatatctatcgaaacgaaagacgaaatagaaatgatggctcaactaagcacttttggagac |
485 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
42680220 |
tggaaaagaatcaatagaaaaagaatcggaattaatcgatatatctatggaaacgaaagacaaaatagaaatgatggctcaactaagcacttttggggac |
42680319 |
T |
|
| Q |
486 |
ttgcttaagaataaata |
502 |
Q |
| |
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||||||||||||||||| |
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| T |
42680320 |
ttgcttaagaataaata |
42680336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 162; Significance: 3e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 21 - 275
Target Start/End: Complemental strand, 3467731 - 3467492
Alignment:
| Q |
21 |
actggttcgaatgtgaaaaagttgaggtagattgctttaggaatacgacactgtcaataacttgagcttaaacttatcannnnnnncttatatgaattca |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
3467731 |
actggttcgaatgtgaaaaagttgaggtagattgctttaggaatacgacactgtcaataacttgagcttaaacttatcatttttt-cttatgtgaattca |
3467633 |
T |
|
| Q |
121 |
aaacaaatgatattcagaaaaggatttttccccatttttggagtgtgtactgtatatgacaagagaaatgatatttcgacaatcaaattttgacaacaat |
220 |
Q |
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||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3467632 |
aaacaaatgatatccagaaaaggattttaccccatttttggagtgtgtactgtatatgacaagagaaatgat--------------attttgacaacaat |
3467547 |
T |
|
| Q |
221 |
ttacattggtgacaagaaaaaggattaaagacattcaacaatttacattgttaac |
275 |
Q |
| |
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|||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3467546 |
ttacattgctgacaagagaaaggattaaagacattcaacaatttacattgttaac |
3467492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 381 - 502
Target Start/End: Complemental strand, 35934768 - 35934647
Alignment:
| Q |
381 |
ataattggaaaagaatcaatagaaaaagaatcggaattaatcgatatatctatcgaaacgaaagacgaaatagaaatgatggctcaactaagc-actttt |
479 |
Q |
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|
||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||| |||||||| |||||||| |||||| | |||||| |
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| T |
35934768 |
ataattggaaaagaatcaatagaaaaataatcataattaatagatatatctatcgaaacgaaagac-aaatagaattgatggcttaactaaccaactttt |
35934670 |
T |
|
| Q |
480 |
ggagacttgcttaagaataaata |
502 |
Q |
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| T |
35934669 |
gaggacttgcttaagaataaata |
35934647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 286 - 342
Target Start/End: Original strand, 192007 - 192063
Alignment:
| Q |
286 |
atggcagaggcaaatagagcttctgcacattttcgttaatccatgagcaggatctat |
342 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||| |
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| T |
192007 |
atggcagaggcaaatagagctcttgcacattttcgttaatccatgaacagaatctat |
192063 |
T |
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