View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20664_low_4 (Length: 494)

Name: NF20664_low_4
Description: NF20664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20664_low_4
NF20664_low_4
[»] chr4 (2 HSPs)
chr4 (18-263)||(17320499-17320741)
chr4 (435-485)||(17320277-17320327)
[»] chr1 (1 HSPs)
chr1 (39-257)||(10533654-10533871)
[»] chr7 (3 HSPs)
chr7 (48-212)||(46491762-46491922)
chr7 (435-475)||(37622823-37622863)
chr7 (441-469)||(37623939-37623967)
[»] chr5 (4 HSPs)
chr5 (29-94)||(8288402-8288467)
chr5 (27-196)||(2959953-2960118)
chr5 (27-196)||(2968422-2968587)
chr5 (435-469)||(31480810-31480844)
[»] chr3 (3 HSPs)
chr3 (435-485)||(54410588-54410638)
chr3 (435-485)||(31999947-31999997)
chr3 (435-471)||(38236475-38236511)
[»] chr8 (1 HSPs)
chr8 (435-471)||(39069093-39069129)
[»] chr2 (9 HSPs)
chr2 (435-471)||(518303-518339)
chr2 (435-471)||(519635-519671)
chr2 (435-471)||(27477849-27477885)
chr2 (435-469)||(10454514-10454548)
chr2 (435-469)||(20606111-20606145)
chr2 (443-485)||(20919220-20919262)
chr2 (435-469)||(21178444-21178478)
chr2 (435-469)||(27478906-27478940)
chr2 (436-469)||(10455587-10455620)


Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 17320741 - 17320499
Alignment:
Q  18 tttttctctgtaaatttaaggtttttt-gacatttgtggatttagaattatgtgtttagaagatgaaagtgaagatacgtaaattaattgaaggtgtatt 116  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||    
T  17320741 tttttctctgtaaatttaaggtttttttgacatctgtggatttagaattatgcgtttagaagataaaagtgaagatacgtaagttaattgaaggtgtatt 17320642  T
Q  117 tgactaggcattaattgatttgatttaaggaagactataaggatgaagaacaaaaagataaagatgttcatatggtttatgcatttctttatttttaata 216  Q
    ||||||||||||    |||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  17320641 tgactaggcatt----gatttggtttaaggaagactataaggatgaagaacaagaggataaagatgttcatatggtttatgcatttctttatttttaata 17320546  T
Q  217 caatttctttttaaaataaggttattgataaaattattattccagca 263  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||    
T  17320545 caatttctttttaaaataaggctattaataaaattattattccagca 17320499  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 435 - 485
Target Start/End: Complemental strand, 17320327 - 17320277
Alignment:
Q  435 taaagaactaatgtgttacaaataaataagataaatgtcatctagtataat 485  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17320327 taaagaactaatgtgttacaaataaataagataaatgtcatctagtgtaat 17320277  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 39 - 257
Target Start/End: Complemental strand, 10533871 - 10533654
Alignment:
Q  39 ttttttgacatttgtggatttagaattatgtgtttagaagatgaaagtgaagatacgtaaattaattgaaggtgtatttgactaggcattaattgatttg 138  Q
    |||||| | ||||| ||||||||||||||| |||||||||||| |||||||||||| ||| ||||||||| |||| ||||  | | |    || ||||||    
T  10533871 ttttttaaaatttgaggatttagaattatgagtttagaagatggaagtgaagatacttaagttaattgaatgtgtgtttgtatggac----atagatttg 10533776  T
Q  139 atttaaggaagactata--aggatgaagaacaaaaagataaagatgttca-tatggtttatgcatttctttatttttaatacaatttctttttaaaataa 235  Q
    |||||||||| |  | |   ||||||||||||  | ||| |||||||| | | || |||||| |||||||||||||||||| ||  |||||| |||| |     
T  10533775 atttaaggaaaaaaagagggggatgaagaacatgaggatgaagatgtttagtttgatttatgtatttctttatttttaataaaaactcttttaaaaacat 10533676  T
Q  236 ggttattgataaaattattatt 257  Q
    ||||||| ||||||||||||||    
T  10533675 ggttattaataaaattattatt 10533654  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 48 - 212
Target Start/End: Complemental strand, 46491922 - 46491762
Alignment:
Q  48 atttgtggatttagaattatgtgtttagaagatgaaagtgaagatacgtaaattaattgaaggtgtatttgactaggcattaattgatttgatttaagga 147  Q
    ||||| ||||||| ||||||| ||||||||||||||| ||||||| | |||  |||| |||||||| ||||| | | ||  ||  |||| |||||||||     
T  46491922 atttggggatttaaaattatgagtttagaagatgaaaatgaagatgcttaagctaatcgaaggtgtgtttgagtggaca--aa--gattcgatttaaggt 46491827  T
Q  148 agactataaggatgaagaacaaaaagataaagatgttcatatggtttatgcatttctttattttt 212  Q
    |||  || |||||||||||||  | ||| ||||||||||| ||||||||| ||||||||||||||    
T  46491826 agaagatgaggatgaagaacatgaggatgaagatgttcatgtggtttatgaatttctttattttt 46491762  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 435 - 475
Target Start/End: Complemental strand, 37622863 - 37622823
Alignment:
Q  435 taaagaactaatgtgttacaaataaataagataaatgtcat 475  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  37622863 taaaggactaatgtgttacaaataaataagataaatgtcat 37622823  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 469
Target Start/End: Original strand, 37623939 - 37623967
Alignment:
Q  441 actaatgtgttacaaataaataagataaa 469  Q
    |||||||||||||||||||||||||||||    
T  37623939 actaatgtgttacaaataaataagataaa 37623967  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 8288467 - 8288402
Alignment:
Q  29 aaatttaaggttttttgacatttgtggatttagaattatgtgtttagaagatgaaagtgaagatac 94  Q
    |||||| ||||||||||| || || ||||||||||||||| |||||||||||| |||| |||||||    
T  8288467 aaattttaggttttttgatatatggggatttagaattatgagtttagaagatggaagtaaagatac 8288402  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 196
Target Start/End: Original strand, 2959953 - 2960118
Alignment:
Q  27 gtaaatttaaggttttttgacatttgtggatttagaattatgtgtttagaagatgaaagtgaagatacgtaaattaattgaaggtgtatttgactaggca 126  Q
    |||||||||||||||||||| ||||| | |||||||||||   |||||||  |||||||||||||||| |||  |||||  ||||||| |||    ||      
T  2959953 gtaaatttaaggttttttgagatttgggaatttagaattaccagtttagataatgaaagtgaagatacttaagctaatttgaggtgtacttg----ggtg 2960048  T
Q  127 ttaattgatttgatttaaggaagactataaggatgaagaacaaaaagataaagatgttcatatggtttat 196  Q
    |  |||||||| |||||||||| |  || ||||||||||| |  ||||| ||||||||| | ||||||||    
T  2960049 tacattgatttaatttaaggaaaaagatgaggatgaagaatatgaagatgaagatgttcctgtggtttat 2960118  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 196
Target Start/End: Original strand, 2968422 - 2968587
Alignment:
Q  27 gtaaatttaaggttttttgacatttgtggatttagaattatgtgtttagaagatgaaagtgaagatacgtaaattaattgaaggtgtatttgactaggca 126  Q
    |||||||||||||||||||| ||||| | |||||||||||   |||||||  |||||||||||||||| |||  |||||  ||||||| |||    ||      
T  2968422 gtaaatttaaggttttttgagatttgggaatttagaattaccagtttagataatgaaagtgaagatacttaagctaatttgaggtgtacttg----ggtg 2968517  T
Q  127 ttaattgatttgatttaaggaagactataaggatgaagaacaaaaagataaagatgttcatatggtttat 196  Q
    |  |||||||| |||||||||| |  || ||||||||||| |  ||||| ||||||||| | ||||||||    
T  2968518 tacattgatttaatttaaggaaaaagatgaggatgaagaatatgaagatgaagatgttcctgtggtttat 2968587  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 435 - 469
Target Start/End: Complemental strand, 31480844 - 31480810
Alignment:
Q  435 taaagaactaatgtgttacaaataaataagataaa 469  Q
    ||||||||||| |||||||||||||||||||||||    
T  31480844 taaagaactaaagtgttacaaataaataagataaa 31480810  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 485
Target Start/End: Original strand, 54410588 - 54410638
Alignment:
Q  435 taaagaactaatgtgttacaaataaataagataaatgtcatctagtataat 485  Q
    ||||| ||||||||||||||||||||||||||||||| ||| |||| ||||    
T  54410588 taaaggactaatgtgttacaaataaataagataaatgacatttagtgtaat 54410638  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 435 - 485
Target Start/End: Complemental strand, 31999997 - 31999947
Alignment:
Q  435 taaagaactaatgtgttacaaataaataagataaatgtcatctagtataat 485  Q
    ||||||| ||||||||||||||| ||||||||||||| ||| |||| ||||    
T  31999997 taaagaattaatgtgttacaaattaataagataaatgacatttagtgtaat 31999947  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 471
Target Start/End: Complemental strand, 38236511 - 38236475
Alignment:
Q  435 taaagaactaatgtgttacaaataaataagataaatg 471  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  38236511 taaagcactaaagtgttacaaataaataagataaatg 38236475  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 435 - 471
Target Start/End: Complemental strand, 39069129 - 39069093
Alignment:
Q  435 taaagaactaatgtgttacaaataaataagataaatg 471  Q
    ||||| |||||||||||||||||||||||||||||||    
T  39069129 taaaggactaatgtgttacaaataaataagataaatg 39069093  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 435 - 471
Target Start/End: Complemental strand, 518339 - 518303
Alignment:
Q  435 taaagaactaatgtgttacaaataaataagataaatg 471  Q
    ||||| |||||||||||||||||||||||||||||||    
T  518339 taaaggactaatgtgttacaaataaataagataaatg 518303  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 435 - 471
Target Start/End: Original strand, 519635 - 519671
Alignment:
Q  435 taaagaactaatgtgttacaaataaataagataaatg 471  Q
    ||||| |||||||||||||||||||||||||||||||    
T  519635 taaaggactaatgtgttacaaataaataagataaatg 519671  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 435 - 471
Target Start/End: Complemental strand, 27477885 - 27477849
Alignment:
Q  435 taaagaactaatgtgttacaaataaataagataaatg 471  Q
    ||||| |||||||||||||||||||||||||||||||    
T  27477885 taaaggactaatgtgttacaaataaataagataaatg 27477849  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 435 - 469
Target Start/End: Complemental strand, 10454548 - 10454514
Alignment:
Q  435 taaagaactaatgtgttacaaataaataagataaa 469  Q
    ||||| |||||||||||||||||||||||||||||    
T  10454548 taaaggactaatgtgttacaaataaataagataaa 10454514  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 435 - 469
Target Start/End: Original strand, 20606111 - 20606145
Alignment:
Q  435 taaagaactaatgtgttacaaataaataagataaa 469  Q
    ||||| |||||||||||||||||||||||||||||    
T  20606111 taaaggactaatgtgttacaaataaataagataaa 20606145  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 443 - 485
Target Start/End: Complemental strand, 20919262 - 20919220
Alignment:
Q  443 taatgtgttacaaataaataagataaatgtcatctagtataat 485  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||    
T  20919262 taatgtgttacaaataaataagataaatgacatttagtgtaat 20919220  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 435 - 469
Target Start/End: Original strand, 21178444 - 21178478
Alignment:
Q  435 taaagaactaatgtgttacaaataaataagataaa 469  Q
    ||||| |||||||||||||||||||||||||||||    
T  21178444 taaaggactaatgtgttacaaataaataagataaa 21178478  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 435 - 469
Target Start/End: Original strand, 27478906 - 27478940
Alignment:
Q  435 taaagaactaatgtgttacaaataaataagataaa 469  Q
    ||||| |||||||||||||||||||||||||||||    
T  27478906 taaaggactaatgtgttacaaataaataagataaa 27478940  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 469
Target Start/End: Original strand, 10455587 - 10455620
Alignment:
Q  436 aaagaactaatgtgttacaaataaataagataaa 469  Q
    |||||||| |||||||||||||||||||||||||    
T  10455587 aaagaactgatgtgttacaaataaataagataaa 10455620  T

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