View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20664_low_6 (Length: 457)
Name: NF20664_low_6
Description: NF20664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20664_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 10 - 394
Target Start/End: Original strand, 47270634 - 47271017
Alignment:
| Q |
10 |
caaaggtaccaccaacattaggataaaataagtatcagtatgatgtactggtataagaacatatggaattacgaatttggatttggatttgtgttgcagt |
109 |
Q |
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| T |
47270634 |
caaaggtaccaccaacattaggataaaataagtatcagtatgatgtactggtataagaacatatggaattacgaatttggatttggatttgt--tgcagt |
47270731 |
T |
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| Q |
110 |
caacaattcacgcagtcaacacgtcggtgattgttggatcaagatcggcgttaaattgcgcattgaatgaaatttaaaccgtttgatctcgatcaaacag |
209 |
Q |
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| T |
47270732 |
caacaattcacgcagtcaacacgtcggtggttgttggatcaagatcggcgttaaattgcgcattgaatgaaatttaaactgtttgatctcgatcaaacag |
47270831 |
T |
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| Q |
210 |
ccaacgatgtgctggccgtgtgaatgtatgaaattgtcgcaacaaatccaaatccagggaatcacttaccttccacgttcactgtctggaagatttatat |
309 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47270832 |
ccaacgatgtgctggccgtgtgaatgtgtgaaattgtcgcaacaaatccaaatccagggaatcacttaccttccacgttcactgtctggaagatttatat |
47270931 |
T |
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| Q |
310 |
atcgttctaggatttcttcaatgcttcaaagcatatattaaaaagtgagaataagttcatttatttatatattc-aatcattttgt |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
47270932 |
atcgttctaggatttcttcaatgcttcaaagcatatattaaaaagtgagaataagttcatttatttatacattcaaatcattttgt |
47271017 |
T |
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