View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20664_low_7 (Length: 443)
Name: NF20664_low_7
Description: NF20664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20664_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 154 - 433
Target Start/End: Original strand, 47627259 - 47627537
Alignment:
| Q |
154 |
atattattagatttgtttcgtatatgaagtgnnnnnnnngttgcatgatcacacacaaaatatagagaagatgagtattgcaagttcaaacttgtctcat |
253 |
Q |
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| T |
47627259 |
atattattagatttgtttcgtatatgaagtgttttttt-gttgcatgatcatacacaaaatatagagaagatgagtattgcaagttcaaacttgtctcat |
47627357 |
T |
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| Q |
254 |
gcaatatttttatcatcagttgtatttacaggnnnnnnnnntgactcaaatgttt-aatttacaatacataaaaaataacagatccaaaaagatctgtaa |
352 |
Q |
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| T |
47627358 |
gcgatattattatcatcagttgtatttacaggaaaaaaaa-tgactcaaatgttttaatttacaatacataaaaaataacagatccaaaaagatctgtaa |
47627456 |
T |
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| Q |
353 |
acagactcgatgtttgttgcttacatttatgaaaatattttttctaagaatttgacattttttaatacactcatccttcat |
433 |
Q |
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| T |
47627457 |
acagactcgatgtttgttgcttacatttatgaaaatattttttctaggaatttgacatttttgaatacactcatccttcat |
47627537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 47626783 - 47626886
Alignment:
| Q |
18 |
gatgagtggtggaagaaacgagagaatgaagcaatctttcgcgccaaaacgtgggtttggggtttttatttccctaaagtgaggtccaatagtaaattga |
117 |
Q |
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| T |
47626783 |
gatgagtggtggaagaaacgagagaatgaagcaatctttcgcgccaaaacgtgggtttggggtttttatttccctaaagtgaggtccaatagtaaattga |
47626882 |
T |
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| Q |
118 |
gtag |
121 |
Q |
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|||| |
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| T |
47626883 |
gtag |
47626886 |
T |
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