View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20664_low_8 (Length: 439)
Name: NF20664_low_8
Description: NF20664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20664_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 59 - 421
Target Start/End: Complemental strand, 37359212 - 37358850
Alignment:
| Q |
59 |
tagaatgcattgtccttaccaatgaaccaagttcaaagagacaaatcacttggatgttattagagtcatttttaatatgtgtgaagttaagtaattttgc |
158 |
Q |
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| T |
37359212 |
tagaatgcattgtccctaccaatgaaccaagctcaaggagacaaatcaattggatgttattagactcatttttaatatgtgtgaagttaagtaattttgc |
37359113 |
T |
|
| Q |
159 |
ttataaataagatagaaagggttactcgttacaccaaatcactaaattgactgaatccatctgaaccgagctacccatatactccatacaaacaaaattt |
258 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37359112 |
ttataaataagatagaaagggttactcgttacaccaaatcactaaattgactgaatccatctgaaccgagctacccatatactccatacaaacaagattt |
37359013 |
T |
|
| Q |
259 |
ggacacacttgtgttaaaaataaaatattagagttagttttgggtgcaatgaagaaataaccaaaagagaatgtggtccaaatcccaagcttcgccgtcc |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37359012 |
ggacacacttgtgttaaaaataaaatattagagttagttttgggtgcaatgaagaaataaccaaaagagaatgtggtccaaatcccaagcttcgccgtcc |
37358913 |
T |
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| Q |
359 |
agaaagatacgttattcgttacattggattttgttctctcattatttgcactgtcagttcttg |
421 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37358912 |
agaaagatacgttattcgttacattggattttgttctctcattatttgcactgtcagttcttg |
37358850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 11165514 - 11165482
Alignment:
| Q |
28 |
taaagtgacactcattttaaaacggaggaagta |
60 |
Q |
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| T |
11165514 |
taaagtgacactcattttaaaacggagggagta |
11165482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 17869224 - 17869192
Alignment:
| Q |
28 |
taaagtgacactcattttaaaacggaggaagta |
60 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
17869224 |
taaagtgacactcattttaaaacggagggagta |
17869192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 29001708 - 29001740
Alignment:
| Q |
28 |
taaagtgacactcattttaaaacggaggaagta |
60 |
Q |
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| T |
29001708 |
taaagtgacactcattttaaaacggatgaagta |
29001740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 40805009 - 40804977
Alignment:
| Q |
31 |
agtgacactcattttaaaacggaggaagtagaa |
63 |
Q |
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||||||||||||||||||||||| ||||||||| |
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| T |
40805009 |
agtgacactcattttaaaacggaagaagtagaa |
40804977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 17674195 - 17674163
Alignment:
| Q |
28 |
taaagtgacactcattttaaaacggaggaagta |
60 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
17674195 |
taaagtgacactcattttaaaacggagggagta |
17674163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 51434205 - 51434169
Alignment:
| Q |
25 |
ggttaaagtgacactcattttaaaacggaggaagtag |
61 |
Q |
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|||||||| |||| ||||||||||||||||||||||| |
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| T |
51434205 |
ggttaaagcgacattcattttaaaacggaggaagtag |
51434169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 47895285 - 47895253
Alignment:
| Q |
28 |
taaagtgacactcattttaaaacggaggaagta |
60 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
47895285 |
taaagcgacactcattttaaaacggaggaagta |
47895253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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