View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20664_low_9 (Length: 436)
Name: NF20664_low_9
Description: NF20664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20664_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 45734635 - 45734228
Alignment:
| Q |
18 |
aatgagaatacagttttacaacaatcaattactcttcttctttctctcaaccctaattttcatagaaactcttgcttgcatagcaagaaacttaagttgc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45734635 |
aatgagaatacagttttacaacaatcaattactcttcttctttctctcaaccctaattttcatagaaactcttgcttgcatagcaagaaacttaagttgc |
45734536 |
T |
|
| Q |
118 |
gctatcattgtggagagatcagaaaattaagannnnnnnn-aacgacacgcataaggagatgagnnnnnnnngtagttctaaacaatggtgcagagaaag |
216 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
45734535 |
gctatcattgtggagagatcagaaaattaagatttttttttaacgacacgcataaggagatgagaaaaaaaagtagttctaaacaatggtgcagagaaag |
45734436 |
T |
|
| Q |
217 |
aaaaaacccacaaaatatgtcttttttactgacaaggtctatatttttcactaacaaattattaaaagtgaatatttgtccttttctatcttttttaacc |
316 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45734435 |
aaaaaacccacaaaatatgtcttttttaccgacaaggtctatatttttcactaacaaattattaaaagtgaatatttgtccttttctatcttttttaacc |
45734336 |
T |
|
| Q |
317 |
aaaaaatatatgtacttttagatgtgacgacaattaactaaacagtaatcaagatagaaaaaagacaaaacatacttgaaggaagcctgcatagcaagaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45734335 |
aaaaaatatatgtacttttagatgtgacgacaattaactaaacagtaatcaagatagaaaaaagacaaaacatacttgaaggaagcctgcatagcaagaa |
45734236 |
T |
|
| Q |
417 |
acatgatg |
424 |
Q |
| |
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|||||||| |
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| T |
45734235 |
acatgatg |
45734228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 266 - 424
Target Start/End: Complemental strand, 45745291 - 45745115
Alignment:
| Q |
266 |
actaacaaattattaaaagtgaatatttgtccttttctatcttttttaaccaaaaaa-tatatgtactttt------------agatgtgacgacaatta |
352 |
Q |
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|||||||||| ||||||||||||| ||| || ||||||||||||||||||||||||| ||||||||||||| |||||||||| |||| |
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| T |
45745291 |
actaacaaatgattaaaagtgaatgtttatctttttctatcttttttaaccaaaaaaatatatgtacttttctaatgtactttagatgtgacgttgatta |
45745192 |
T |
|
| Q |
353 |
actaaacagtaatcaagatagaaaaaa-gacaaaacata----cttgaaggaagcctgcatagcaagaaacatgatg |
424 |
Q |
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|||||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
45745191 |
actaaatagtaatcaagaaagaaaaaaagacaaaacatatatacttgaaggaagcctgcatggcaagaaacatgatg |
45745115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 8855152 - 8855048
Alignment:
| Q |
18 |
aatgagaatacagttttacaacaatcaattactcttcttctttctctcaaccctaattttcatagaaactcttgcttgcatagcaagaaacttaagttgc |
117 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||| ||||||||||||||| |||||||| ||||||| ||||||||||| |||| ||||||||||||| |
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| T |
8855152 |
aatgagaatacaattttccaacaatcaattactattcttctttctctca--gttaattttcgtagaaacacttgcttgcatcgcaaaaaacttaagttgc |
8855055 |
T |
|
| Q |
118 |
gctatca |
124 |
Q |
| |
|
|||||| |
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|
| T |
8855054 |
tctatca |
8855048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 30047579 - 30047693
Alignment:
| Q |
18 |
aatgagaatacagttttacaacaatcaattactcttcttctttctctc-----------------aaccctaattttcatagaaactcttgcttgcatag |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
30047579 |
aatgagaatacaattttacaacaatcaattactcttcttctttctctcagttctctcaatttctcaaccctaattttcatagaaactcttgcttgcattg |
30047678 |
T |
|
| Q |
101 |
caagaaacttaagtt |
115 |
Q |
| |
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||||||||||||||| |
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|
| T |
30047679 |
caagaaacttaagtt |
30047693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 30067399 - 30067445
Alignment:
| Q |
18 |
aatgagaatacagttttacaacaatcaattactcttcttctttctct |
64 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||||||| |
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|
| T |
30067399 |
aatgagaatatagttttacaacaatcaattacgcttcttctttctct |
30067445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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