View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20665_high_105 (Length: 276)

Name: NF20665_high_105
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20665_high_105
NF20665_high_105
[»] chr8 (3 HSPs)
chr8 (18-276)||(36094619-36094878)
chr8 (102-166)||(3403594-3403658)
chr8 (117-153)||(25248407-25248443)
[»] chr2 (4 HSPs)
chr2 (97-166)||(40591224-40591293)
chr2 (102-166)||(9641063-9641127)
chr2 (106-166)||(8192447-8192507)
chr2 (104-160)||(12914968-12915024)
[»] chr5 (5 HSPs)
chr5 (100-166)||(36895466-36895532)
chr5 (100-164)||(2473778-2473842)
chr5 (104-166)||(19145505-19145567)
chr5 (19-56)||(41084135-41084172)
chr5 (104-156)||(15931110-15931162)
[»] chr1 (8 HSPs)
chr1 (104-166)||(32729586-32729648)
chr1 (119-154)||(33905619-33905654)
chr1 (119-166)||(39964553-39964600)
chr1 (100-154)||(809275-809329)
chr1 (104-154)||(16539661-16539711)
chr1 (100-153)||(16899557-16899610)
chr1 (104-161)||(25237083-25237140)
chr1 (102-154)||(46113493-46113546)
[»] chr7 (5 HSPs)
chr7 (97-166)||(12211622-12211691)
chr7 (100-156)||(42814919-42814976)
chr7 (119-166)||(22696365-22696412)
chr7 (100-154)||(22703543-22703598)
chr7 (104-161)||(28647019-28647076)
[»] chr3 (4 HSPs)
chr3 (104-154)||(21362996-21363047)
chr3 (100-166)||(4252486-4252552)
chr3 (106-166)||(50731330-50731389)
chr3 (106-166)||(50781465-50781524)
[»] chr6 (3 HSPs)
chr6 (104-166)||(9208293-9208355)
chr6 (104-166)||(17149550-17149612)
chr6 (102-166)||(33499515-33499580)
[»] chr4 (4 HSPs)
chr4 (104-154)||(38740903-38740953)
chr4 (101-154)||(22630277-22630330)
chr4 (19-56)||(37172917-37172954)
chr4 (19-52)||(37302643-37302676)


Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 276
Target Start/End: Complemental strand, 36094878 - 36094619
Alignment:
Q  18 agtatccgattcaaggatcgactaatccgaagggatcaaccctgcctcccaattgagggg-ccttattgaaagtcagaactttgctttgtatggacttgt 116  Q
    |||||||||| ||| || |||||||||||| |||| |||| | |||||||| ||| |||| |||||||||||| |||| |||||||||||||||||||||    
T  36094878 agtatccgatccaaagaccgactaatccgaggggaccaacaccgcctcccacttgcgggggccttattgaaagacagagctttgctttgtatggacttgt 36094779  T
Q  117 ctaccgaaattgataccagagggaatcaaacctgagactttgagatgagccactcttcatcttacaaactggttttgtaataatgagttgagcacaatat 216  Q
    ||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  36094778 ctaccgaaattgataccagagggaatcgaacctgagaccttgagaggagccactcttcatcttacaaaatggttttgtaataatgagttgagcacaatat 36094679  T
Q  217 aaaacaatataatgacatcaaagtctttcaatttagaccatctgctatttatattcacac 276  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  36094678 aaaacaatataatgacatcaaagcctttcaatttagaccacctgctatttatattcacac 36094619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 3403594 - 3403658
Alignment:
Q  102 tttgtatggacttgtctaccgaaattgataccagagggaatcaaacctgagactttgagatgagc 166  Q
    |||||||||||||| | ||||||||||  |||||| |||||| ||| | |||| |||||||||||    
T  3403594 tttgtatggacttgcccaccgaaattggcaccagatggaatcgaacataagaccttgagatgagc 3403658  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 153
Target Start/End: Complemental strand, 25248443 - 25248407
Alignment:
Q  117 ctaccgaaattgataccagagggaatcaaacctgaga 153  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  25248443 ctaccgaaattgacaccagagggaatcgaacctgaga 25248407  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 166
Target Start/End: Complemental strand, 40591293 - 40591224
Alignment:
Q  97 tttgctttgtatggacttgtctaccgaaattgataccagagggaatcaaacctgagactttgagatgagc 166  Q
    |||||| |||||||||||| | ||||||||||  |||||| | |||||||||||||||||||||| ||||    
T  40591293 tttgctctgtatggacttgcccaccgaaattgccaccagaagaaatcaaacctgagactttgagaggagc 40591224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 9641127 - 9641063
Alignment:
Q  102 tttgtatggacttgtctaccgaaattgataccagagggaatcaaacctgagactttgagatgagc 166  Q
    |||||||||||||  | ||| |||||||||||| | ||||||||| |||||| ||||||||||||    
T  9641127 tttgtatggacttacccaccaaaattgataccaaaaggaatcaaatctgagattttgagatgagc 9641063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 166
Target Start/End: Original strand, 8192447 - 8192507
Alignment:
Q  106 tatggacttgtctaccgaaattgataccagagggaatcaaacctgagactttgagatgagc 166  Q
    |||||||||| | ||||| ||||  ||||||||||||| |||||||||| |||||| ||||    
T  8192447 tatggacttgcccaccgacattggcaccagagggaatcgaacctgagaccttgagaggagc 8192507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 12914968 - 12915024
Alignment:
Q  104 tgtatggacttgtctaccgaaattgataccagagggaatcaaacctgagactttgag 160  Q
    |||||||||||||||| | |||||||||||| ||  |||| ||| ||||||||||||    
T  12914968 tgtatggacttgtctatcaaaattgataccaaagctaatcgaacttgagactttgag 12915024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 166
Target Start/End: Complemental strand, 36895532 - 36895466
Alignment:
Q  100 gctttgtatggacttgtctaccgaaattgataccagagggaatcaaacctgagactttgagatgagc 166  Q
    |||||||||||||||| | |||||||||| |||||||||||||| ||| ||| || |||||| ||||    
T  36895532 gctttgtatggacttgaccaccgaaattggtaccagagggaatcgaacatgaaaccttgagaggagc 36895466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 2473778 - 2473842
Alignment:
Q  100 gctttgtatggacttgtctaccgaaattgataccagagggaatcaaacctgagactttgagatga 164  Q
    ||||||||| |||||||| | ||||||||| | | |||| ||||||||||||||| |||||||||    
T  2473778 gctttgtatagacttgtccatcgaaattgacatcggaggaaatcaaacctgagacattgagatga 2473842  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 166
Target Start/End: Original strand, 19145505 - 19145567
Alignment:
Q  104 tgtatggacttgtctaccgaaattgataccagagggaatcaaacctgagactttgagatgagc 166  Q
    |||||||||||| | ||||||||||  ||||||||||||| |||| ||||| |||||| ||||    
T  19145505 tgtatggacttgcccaccgaaattggcaccagagggaatcgaaccggagaccttgagaggagc 19145567  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 41084172 - 41084135
Alignment:
Q  19 gtatccgattcaaggatcgactaatccgaagggatcaa 56  Q
    |||||||||||||| | |||||||||||||||||||||    
T  41084172 gtatccgattcaagaaccgactaatccgaagggatcaa 41084135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 15931162 - 15931110
Alignment:
Q  104 tgtatggacttgtctaccgaaattgataccagagggaatcaaacctgagactt 156  Q
    |||||||||||  | ||||||||||  ||||||||||||| ||||||||||||    
T  15931162 tgtatggacttagccaccgaaattggcaccagagggaatcgaacctgagactt 15931110  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 32729648 - 32729586
Alignment:
Q  104 tgtatggacttgtctaccgaaattgataccagagggaatcaaacctgagactttgagatgagc 166  Q
    |||||||||||| | ||||||||||  |||| |||||||| ||||||||||||||||| ||||    
T  32729648 tgtatggacttgcccaccgaaattggcaccatagggaatcgaacctgagactttgagaggagc 32729586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 154
Target Start/End: Original strand, 33905619 - 33905654
Alignment:
Q  119 accgaaattgataccagagggaatcaaacctgagac 154  Q
    ||||||||||||||||||||||||| ||||||||||    
T  33905619 accgaaattgataccagagggaatcgaacctgagac 33905654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 166
Target Start/End: Complemental strand, 39964600 - 39964553
Alignment:
Q  119 accgaaattgataccagagggaatcaaacctgagactttgagatgagc 166  Q
    ||||||||||  |||||||||||||||||||||||| |||||| ||||    
T  39964600 accgaaattggcaccagagggaatcaaacctgagaccttgagaggagc 39964553  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 154
Target Start/End: Complemental strand, 809329 - 809275
Alignment:
Q  100 gctttgtatggacttgtctaccgaaattgataccagagggaatcaaacctgagac 154  Q
    |||||||||||||||| | ||||||||||| || || || |||||||||||||||    
T  809329 gctttgtatggacttgcccaccgaaattgacactaggggtaatcaaacctgagac 809275  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 16539711 - 16539661
Alignment:
Q  104 tgtatggacttgtctaccgaaattgataccagagggaatcaaacctgagac 154  Q
    |||||||||||| | ||| ||||||  ||||||||||||||||||||||||    
T  16539711 tgtatggacttgcccaccaaaattggcaccagagggaatcaaacctgagac 16539661  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 16899610 - 16899557
Alignment:
Q  100 gctttgtatggacttgtctaccgaaattgataccagagggaatcaaacctgaga 153  Q
    |||||||||||||| | | ||||||||||  ||||||||||||| |||||||||    
T  16899610 gctttgtatggactggcccaccgaaattggcaccagagggaatcgaacctgaga 16899557  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 25237083 - 25237140
Alignment:
Q  104 tgtatggacttgtctaccgaaattgataccagagggaatcaaacctgagactttgaga 161  Q
    |||||||||||| | ||||||||||  || |||||||||| |||||||||| ||||||    
T  25237083 tgtatggacttgcccaccgaaattggcactagagggaatcgaacctgagaccttgaga 25237140  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 46113493 - 46113546
Alignment:
Q  102 tttgtatggactt-gtctaccgaaattgataccagagggaatcaaacctgagac 154  Q
    ||||||||||||| | | |||||||||| |||||||||||||| ||||||||||    
T  46113493 tttgtatggacttagcccaccgaaattggtaccagagggaatcgaacctgagac 46113546  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 166
Target Start/End: Original strand, 12211622 - 12211691
Alignment:
Q  97 tttgctttgtatggacttgtctaccgaaattgataccagagggaatcaaacctgagactttgagatgagc 166  Q
    |||||| |||||||||||||| | ||||||||  |||||||| ||||||||||||||  |||||| ||||    
T  12211622 tttgctctgtatggacttgtccatcgaaattggcaccagaggaaatcaaacctgagatcttgagaggagc 12211691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 42814976 - 42814919
Alignment:
Q  100 gctttgtatggactt-gtctaccgaaattgataccagagggaatcaaacctgagactt 156  Q
    ||||||||||||||| | | ||||||||||| ||||||||||||| ||||||||||||    
T  42814976 gctttgtatggacttagcccaccgaaattgacaccagagggaatcgaacctgagactt 42814919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 166
Target Start/End: Complemental strand, 22696412 - 22696365
Alignment:
Q  119 accgaaattgataccagagggaatcaaacctgagactttgagatgagc 166  Q
    ||||||||||  |||||||||||||||||||||||| |||||| ||||    
T  22696412 accgaaattggcaccagagggaatcaaacctgagaccttgagaggagc 22696365  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 154
Target Start/End: Complemental strand, 22703598 - 22703543
Alignment:
Q  100 gctttgtatggactt-gtctaccgaaattgataccagagggaatcaaacctgagac 154  Q
    ||||||||||||||| | | ||||||||||| ||||||||||||| ||||||||||    
T  22703598 gctttgtatggacttagcccaccgaaattgacaccagagggaatcgaacctgagac 22703543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 28647076 - 28647019
Alignment:
Q  104 tgtatggacttgtctaccgaaattgataccagagggaatcaaacctgagactttgaga 161  Q
    ||||| |||||| | ||||||||||  ||||||||||||| |||||||||| ||||||    
T  28647076 tgtattgacttgcccaccgaaattggcaccagagggaatcgaacctgagaccttgaga 28647019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 21363047 - 21362996
Alignment:
Q  104 tgtatggactt-gtctaccgaaattgataccagagggaatcaaacctgagac 154  Q
    ||||||||||| | ||||||||||||| ||||||||||||| ||||||||||    
T  21363047 tgtatggacttagcctaccgaaattgacaccagagggaatcgaacctgagac 21362996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 166
Target Start/End: Original strand, 4252486 - 4252552
Alignment:
Q  100 gctttgtatggacttgtctaccgaaattgataccagagggaatcaaacctgagactttgagatgagc 166  Q
    ||||||||||||||||   || |||||||  ||||||||||||||||| |||||| |||||| ||||    
T  4252486 gctttgtatggacttgatcactgaaattggcaccagagggaatcaaacttgagaccttgagaggagc 4252552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 166
Target Start/End: Original strand, 50731330 - 50731389
Alignment:
Q  106 tatggacttgtctaccgaaattgataccagagggaatcaaacctgagactttgagatgagc 166  Q
    |||||||||||| |||||||||| ||||| | |||||||||| |||||| |||||| ||||    
T  50731330 tatggacttgtccaccgaaattggtacca-acggaatcaaacttgagaccttgagaggagc 50731389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 166
Target Start/End: Complemental strand, 50781524 - 50781465
Alignment:
Q  106 tatggacttgtctaccgaaattgataccagagggaatcaaacctgagactttgagatgagc 166  Q
    |||||||||||| |||||||||| ||||| | |||||||||| |||||| |||||| ||||    
T  50781524 tatggacttgtccaccgaaattggtacca-acggaatcaaacttgagaccttgagaggagc 50781465  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 9208355 - 9208293
Alignment:
Q  104 tgtatggacttgtctaccgaaattgataccagagggaatcaaacctgagactttgagatgagc 166  Q
    |||||||||||| | ||||||||||  ||||| ||||||| |||||||||| |||||| ||||    
T  9208355 tgtatggacttgcccaccgaaattggcaccagggggaatcgaacctgagaccttgagaggagc 9208293  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 166
Target Start/End: Original strand, 17149550 - 17149612
Alignment:
Q  104 tgtatggacttgtctaccgaaattgataccagagggaatcaaacctgagactttgagatgagc 166  Q
    |||||||||||| | |||||||||   ||||||||||||| |||||||||| |||||| ||||    
T  17149550 tgtatggacttgccaaccgaaattagcaccagagggaatcgaacctgagaccttgagaggagc 17149612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 33499580 - 33499515
Alignment:
Q  102 tttgtatggacttgtctaccgaaattgataccagagggaatc-aaacctgagactttgagatgagc 166  Q
    |||||||||||| | | ||||||||||| |||||||||||||  |||||||||| |||||| ||||    
T  33499580 tttgtatggactagcccaccgaaattgacaccagagggaatctgaacctgagaccttgagaggagc 33499515  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 38740953 - 38740903
Alignment:
Q  104 tgtatggacttgtctaccgaaattgataccagagggaatcaaacctgagac 154  Q
    ||||| ||| |||| ||||||||||| ||||||||||||| ||||||||||    
T  38740953 tgtatagacctgtccaccgaaattgacaccagagggaatcgaacctgagac 38740903  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 22630277 - 22630330
Alignment:
Q  101 ctttgtatggacttgtctaccgaaattgataccagagggaatcaaacctgagac 154  Q
    ||||||||||||||| | ||| ||||||  ||||||||||||| ||||||||||    
T  22630277 ctttgtatggacttgcccaccaaaattggcaccagagggaatcgaacctgagac 22630330  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 37172954 - 37172917
Alignment:
Q  19 gtatccgattcaaggatcgactaatccgaagggatcaa 56  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  37172954 gtatccgatccaaggatcgactaatccgaaaggatcaa 37172917  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 37302676 - 37302643
Alignment:
Q  19 gtatccgattcaaggatcgactaatccgaaggga 52  Q
    |||||||||||||| |||||||||||||||||||    
T  37302676 gtatccgattcaagaatcgactaatccgaaggga 37302643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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