View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20665_high_108 (Length: 274)

Name: NF20665_high_108
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20665_high_108
NF20665_high_108
[»] chr6 (26 HSPs)
chr6 (18-259)||(5690089-5690330)
chr6 (18-259)||(5073838-5074079)
chr6 (18-259)||(5176649-5176890)
chr6 (17-259)||(5128346-5128588)
chr6 (18-259)||(5278476-5278717)
chr6 (17-252)||(5096625-5096860)
chr6 (17-256)||(5425823-5426062)
chr6 (18-252)||(5066624-5066858)
chr6 (20-252)||(5102546-5102778)
chr6 (19-259)||(5447497-5447737)
chr6 (18-253)||(5344777-5345012)
chr6 (17-252)||(5350311-5350546)
chr6 (18-258)||(5181857-5182097)
chr6 (24-258)||(5284325-5284559)
chr6 (18-259)||(5383236-5383477)
chr6 (18-259)||(5433945-5434186)
chr6 (17-252)||(5157557-5157792)
chr6 (18-259)||(5354544-5354785)
chr6 (17-258)||(5257263-5257504)
chr6 (17-252)||(5370488-5370723)
chr6 (17-226)||(5396893-5397102)
chr6 (18-189)||(5281280-5281451)
chr6 (85-259)||(5447067-5447241)
chr6 (18-189)||(5179521-5179692)
chr6 (131-252)||(5243910-5244031)
chr6 (17-89)||(5243842-5243914)
[»] chr5 (2 HSPs)
chr5 (17-258)||(8877520-8877761)
chr5 (144-192)||(20812254-20812302)
[»] chr4 (18 HSPs)
chr4 (18-258)||(4344557-4344797)
chr4 (18-258)||(4360988-4361228)
chr4 (18-258)||(4320549-4320789)
chr4 (18-258)||(4123869-4124109)
chr4 (18-258)||(4335256-4335496)
chr4 (38-256)||(4133375-4133591)
chr4 (17-223)||(6621436-6621642)
chr4 (17-223)||(6815416-6815622)
chr4 (38-223)||(7885341-7885526)
chr4 (36-224)||(6498474-6498662)
chr4 (17-199)||(6752930-6753112)
chr4 (17-223)||(6796733-6796939)
chr4 (17-223)||(6728352-6728558)
chr4 (17-215)||(6545377-6545575)
chr4 (17-223)||(6651013-6651219)
chr4 (17-223)||(6837220-6837426)
chr4 (17-220)||(6588125-6588328)
chr4 (17-58)||(6822802-6822843)
[»] scaffold0294 (1 HSPs)
scaffold0294 (18-252)||(8830-9064)
[»] chr7 (3 HSPs)
chr7 (18-256)||(36213759-36213997)
chr7 (18-223)||(18935332-18935537)
chr7 (39-223)||(34724537-34724721)
[»] chr2 (2 HSPs)
chr2 (20-256)||(22584146-22584382)
chr2 (144-202)||(14767123-14767181)
[»] chr3 (5 HSPs)
chr3 (59-259)||(47986823-47987023)
chr3 (59-259)||(47996110-47996310)
chr3 (59-259)||(48005397-48005597)
chr3 (59-259)||(48014682-48014882)
chr3 (144-202)||(32411256-32411314)
[»] scaffold0552 (1 HSPs)
scaffold0552 (17-223)||(8214-8420)
[»] scaffold0813 (1 HSPs)
scaffold0813 (17-223)||(4755-4961)
[»] scaffold0373 (1 HSPs)
scaffold0373 (17-223)||(9636-9842)
[»] scaffold0286 (1 HSPs)
scaffold0286 (17-223)||(6605-6811)
[»] chr8 (5 HSPs)
chr8 (144-201)||(3286691-3286748)
chr8 (144-192)||(31175824-31175872)
chr8 (144-202)||(3262802-3262860)
chr8 (144-202)||(3398696-3398754)
chr8 (144-192)||(3375055-3375103)


Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 5690089 - 5690330
Alignment:
Q  18 aatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtgg 117  Q
    ||||||||||  ||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  5690089 aatccttcatgtccgcacagagaaatatacccaatgctttttgaccttacaattgaaaagggcacacttgttattccagtgtcatttgcaagcagagtgg 5690188  T
Q  118 ttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttct 217  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  5690189 ttaaagattccatttgttccaagtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttct 5690288  T
Q  218 tggaaggctagaaaggcgaatacaatcttccaaatttatcag 259  Q
    ||||||| ||||||||| ||||||||||||||||||||||||    
T  5690289 tggaaggttagaaaggctaatacaatcttccaaatttatcag 5690330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 5073838 - 5074079
Alignment:
Q  18 aatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtgg 117  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||| | ||||||||||| | ||||||||    
T  5073838 aatccttcatagccgcacaaagaaatatatccaatgcttttcgaccttactactgaaaagggcactcttgttattgcggtgttatttgctatcagagtgg 5073937  T
Q  118 ttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttct 217  Q
    ||||||||  ||| ||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||| ||||||| |||||    
T  5073938 ttaaagatgtcatctgttctaagtcctcttccaacttgtcaatcattgaacacccggaaagaatgagagtttttagagatttcaacttatagatacttct 5074037  T
Q  218 tggaaggctagaaaggcgaatacaatcttccaaatttatcag 259  Q
    |||||||||   ||| | ||||||||||||||||||||||||    
T  5074038 tggaaggctctgaagaccaatacaatcttccaaatttatcag 5074079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 5176890 - 5176649
Alignment:
Q  18 aatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtgg 117  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||| | ||| |||||||| ||||||||| |||||||||||||||||||||| |    
T  5176890 aatccttcatagccgcacaaagagatgtatccaatgctttttgaccttactattgacaagggcactcttgttattgcagtgttatttgcaagcagagtag 5176791  T
Q  118 ttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttct 217  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||| |||||||||| ||||||| |||||    
T  5176790 ttaaagattccatttgttccaagtcctcttccaacttgtcaatcatcgaacacccagaaagaatgagtgttttcaaagatttcaacttatagatacttct 5176691  T
Q  218 tggaaggctagaaaggcgaatacaatcttccaaatttatcag 259  Q
    |||||| ||   ||||| ||||||||||||||| ||||||||    
T  5176690 tggaagactctgaaggctaatacaatcttccaagtttatcag 5176649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 259
Target Start/End: Original strand, 5128346 - 5128588
Alignment:
Q  17 aaatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtg 116  Q
    ||||||||||| |||||||| ||| |||||||||||||||||||||||||| ||||||||||| || ||| ||||| ||||||||||||||||||||||     
T  5128346 aaatccttcatggccgcacagagagatatatccaatgctttttgaccttactactgaaaagggtactctttttattgcagtgttatttgcaagcagagtt 5128445  T
Q  117 gttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttc 216  Q
    ||||| |||| ||||||||||||||||||||||||||||| |||||||  ||| |||||||||||||||||||||| |||||||||| ||||||||||||    
T  5128446 gttaatgattccatttgttccaagtcctcttccaacttgtcaatcattatacaaccagaaagaatgagagttttcaaagatttcaacttatagatgcttc 5128545  T
Q  217 ttggaaggctagaaaggcgaatacaatcttccaaatttatcag 259  Q
    |||| |||||| | |||| ||| ||||||||||||||||||||    
T  5128546 ttgggaggctacataggctaatgcaatcttccaaatttatcag 5128588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 5278717 - 5278476
Alignment:
Q  18 aatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtgg 117  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||| |  || |||||||| ||||||||| |||||||||||||||||||||| |    
T  5278717 aatccttcatagccgcacaaagagatgtatccaatgctttttgaccttactatagacaagggcactcttgttattgcagtgttatttgcaagcagagtag 5278618  T
Q  118 ttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttct 217  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||| |||||||||| ||||||| |||||    
T  5278617 ttaaagattccatttgttccaagtcctcttccaacttgtcaatcatcgaacacccagaaagaatgagtgttttcaaagatttcaacttatagatacttct 5278518  T
Q  218 tggaaggctagaaaggcgaatacaatcttccaaatttatcag 259  Q
    |||||| ||   ||||| ||||||||||||||| ||||||||    
T  5278517 tggaagactctgaaggctaatacaatcttccaagtttatcag 5278476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 5096860 - 5096625
Alignment:
Q  17 aaatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtg 116  Q
    ||||||||||| ||| || | |||||| ||||||||||||||||||||||| ||||||||||| || ||| |||||||||||||||||||||||||| ||    
T  5096860 aaatccttcatggccacatagagaaatgtatccaatgctttttgaccttactactgaaaagggtactctttttattccagtgttatttgcaagcagaatg 5096761  T
Q  117 gttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttc 216  Q
    ||||| |||| ||||||||| | |||||||||||||| || |||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5096760 gttaatgattccatttgttctatgtcctcttccaactcgtcaatcattatacacccagaaagaatgagagttttcagagatttcaacttatagatgcttc 5096661  T
Q  217 ttggaaggctagaaaggcgaatacaatcttccaaat 252  Q
     ||||||||||  ||||| || ||||||||||||||    
T  5096660 ctggaaggctacgaaggctaacacaatcttccaaat 5096625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 256
Target Start/End: Complemental strand, 5426062 - 5425823
Alignment:
Q  17 aaatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtg 116  Q
    |||||||||||||||||||||||| || ||||||||||||| |||| |||| ||||||||||| || ||| ||||| |||| |||| ||||| |||||||    
T  5426062 aaatccttcatagccgcacaaagagatgtatccaatgctttgtgacattaccactgaaaagggtactctttttattgcagttttatgtgcaatcagagtg 5425963  T
Q  117 gttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttc 216  Q
    |||||||||| ||||||||| | ||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  5425962 gttaaagattccatttgttctatgtcctcttccaacttgtcaatcattacacacccagaaagaatgagagttttcagagatttcaacttatagatgtttc 5425863  T
Q  217 ttggaaggctagaaaggcgaatacaatcttccaaatttat 256  Q
    ||||||||||   |||||||| ||||||||| ||||||||    
T  5425862 ttggaaggctttgaaggcgaacacaatcttctaaatttat 5425823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 5066624 - 5066858
Alignment:
Q  18 aatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtgg 117  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| |  ||| ||||| |||| |||| ||||||||||||||    
T  5066624 aatccttcatagccgcacaaagagatgtatccaatgctttttgaccttactactgaaaagggtattctttttattgcagttttatgtgcaagcagagtgg 5066723  T
Q  118 ttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttct 217  Q
    ||||||||| ||||||||| | ||||||||| ||||||| |||||||  |||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  5066724 ttaaagattccatttgttctatgtcctcttctaacttgtcaatcattatacacccagaaagaatgagagttttaagagatttcaacttatagatgcttct 5066823  T
Q  218 tggaaggctagaaaggcgaatacaatcttccaaat 252  Q
    ||||||| ||  ||||| || ||||||||||||||    
T  5066824 tggaaggttacgaaggctaacacaatcttccaaat 5066858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 252
Target Start/End: Original strand, 5102546 - 5102778
Alignment:
Q  20 tccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtggtt 119  Q
    |||||||||||| || | ||| |||||||||||||||||||||||||| ||||||||||||||  |||||||| ||||||| ||||| || |||||||||    
T  5102546 tccttcatagccacatagagagatatatccaatgctttttgaccttactactgaaaagggcactgttgttattgcagtgttgtttgctagaagagtggtt 5102645  T
Q  120 aaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttcttg 219  Q
    || |||| ||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||  |||||| |||||||||| |||||||||||||||    
T  5102646 aatgattccatttgttccaagtcgtcttccaacttgtcaatcattaaacacccagaaagaatgagtattttcaaagatttcaacttatagatgcttcttg 5102745  T
Q  220 gaaggctagaaaggcgaatacaatcttccaaat 252  Q
    ||||||||  ||||| || ||||||||||||||    
T  5102746 gaaggctacgaaggctaacacaatcttccaaat 5102778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 5447737 - 5447497
Alignment:
Q  19 atccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtggt 118  Q
    |||||||| | |||||||||||||||||||||||||| || ||||| || || |||||||||||  ||||||||  ||| ||||||||||||||||||||    
T  5447737 atccttcaaatccgcacaaagaaatatatccaatgctcttcgacctaactaccgaaaagggcactgttgttattgaagtattatttgcaagcagagtggt 5447638  T
Q  119 taaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttctt 218  Q
    |||||||| ||| ||||||||||||||||||| ||||| |||| || |||| |||||||||||||||||||||| |||||||||| ||||||||||||||    
T  5447637 taaagattccatctgttccaagtcctcttccagcttgtcaatctttaaacaaccagaaagaatgagagttttcaaagatttcaacttatagatgcttctt 5447538  T
Q  219 ggaaggctagaaaggcgaatacaatcttccaaatttatcag 259  Q
    || ||| ||   |||| ||||||||||||||||||||||||    
T  5447537 gggaggttacctaggccaatacaatcttccaaatttatcag 5447497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 5345012 - 5344777
Alignment:
Q  18 aatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtgg 117  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||| ||| ||||||| ||  |||||||| ||||||||||||| | |||| |||    
T  5345012 aatccttcatagccacacagagaaatatatccaatgctttttgaccttactactaaaaagggaacttttgttattgcagtgttatttgcgatcagaatgg 5344913  T
Q  118 ttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttct 217  Q
    ||||||||| ||||||||| ||||||||||||||||||| |||| || |||| || ||||||||||||||||| ||||| |||||| |||||||||||||    
T  5344912 ttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaacaacccgaaagaatgagagtttttagagaattcaacttatagatgcttct 5344813  T
Q  218 tggaaggctagaaaggcgaatacaatcttccaaatt 253  Q
    ||| |||||| | |||| |||||| |||||||||||    
T  5344812 tggcaggctacataggctaatacagtcttccaaatt 5344777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 5350546 - 5350311
Alignment:
Q  17 aaatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtg 116  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| |  ||| ||||| |||| |||| |||||||||||||    
T  5350546 aaatccttcatagccgcacaaagagatgtatccaatgctttttgaccttactactgaaaagggtattctttttattgcagttttatgtgcaagcagagtg 5350447  T
Q  117 gttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttc 216  Q
    |||||||||| ||||||||| | ||||||||||||||||| |||||||  |||||| ||||||||||||||||| |||||||||||| || |||||||||    
T  5350446 gttaaagattccatttgttctatgtcctcttccaacttgtcaatcattatacaccctgaaagaatgagagttttgagagatttcaacttaaagatgcttc 5350347  T
Q  217 ttggaaggctagaaaggcgaatacaatcttccaaat 252  Q
    ||||||||||   ||||| || |||||| |||||||    
T  5350346 ttggaaggctttgaaggctaacacaatcctccaaat 5350311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 5181857 - 5182097
Alignment:
Q  18 aatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtgg 117  Q
    ||||||||||| || ||||| ||||||||| |||||||||| ||| |||| |||||||| ||||| ||||||||| ||||||||||||||| ||  ||||    
T  5181857 aatccttcatatccacacaaggaaatatatgcaatgcttttggactttactactgaaaacggcactcttgttattgcagtgttatttgcaatcaatgtgg 5181956  T
Q  118 ttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttct 217  Q
    ||||||||| |||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||| || |  ||||||||  |||||||||||||    
T  5181957 ttaaagatttcatttgttccaaatcctcttccaacttgtcaatcattaaacacccagaaagaatgagagtgtttaatgatttcaaattatagatgcttct 5182056  T
Q  218 tggaaggctagaaaggcgaatacaatcttccaaatttatca 258  Q
    |||||||||   ||||| ||| |||||||||||||||||||    
T  5182057 tggaaggctttgaaggctaatgcaatcttccaaatttatca 5182097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 24 - 258
Target Start/End: Original strand, 5284325 - 5284559
Alignment:
Q  24 tcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtggttaaag 123  Q
    ||||| |||||||||| |||||||||||||||||| |||||||| |||||||||||||| ||||||||| | |||||||| || | ||||||||||||||    
T  5284325 tcataaccgcacaaagcaatatatccaatgcttttcgaccttactactgaaaagggcactcttgttattgcggtgttattagctatcagagtggttaaag 5284424  T
Q  124 attgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttcttggaag 223  Q
    ||  ||| ||||| ||||||||||||||||||| |||||||||||||||| ||||||||| |||||| |||||||||||| |||||||||||| ||| ||    
T  5284425 atgtcatctgttctaagtcctcttccaacttgtcaatcattgaacacccaaaaagaatgaaagtttttagagatttcaacttatagatgcttcgtgggag 5284524  T
Q  224 gctagaaaggcgaatacaatcttccaaatttatca 258  Q
    |||| | | || ||||||| |||| ||||||||||    
T  5284525 gctacataagctaatacaaccttcaaaatttatca 5284559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 5383477 - 5383236
Alignment:
Q  18 aatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtgg 117  Q
    |||||||||| ||||||||||||||||||| |||| ||||||||||||| || ||||| ||| || ||||||||| ||||||||| |||||||| ||| |    
T  5383477 aatccttcatggccgcacaaagaaatatatacaatactttttgaccttaaaattgaaaggggaactcttgttattgcagtgttatctgcaagcaaagtag 5383378  T
Q  118 ttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttct 217  Q
    ||||||||| ||||||||| | ||||||||||||||||  |||| || |||| ||||||||||||||||||||||||||||||||| |||| ||||||||    
T  5383377 ttaaagattccatttgttctatgtcctcttccaacttggtaatctttaaacaaccagaaagaatgagagttttcagagatttcaacttataaatgcttct 5383278  T
Q  218 tggaaggctagaaaggcgaatacaatcttccaaatttatcag 259  Q
    ||| |||||| | |||| || ||| ||||||||||| |||||    
T  5383277 tgggaggctacataggctaacacagtcttccaaattaatcag 5383236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 5434186 - 5433945
Alignment:
Q  18 aatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtgg 117  Q
    ||||||||||| ||||||||||| |||||||||||||||||||| || |  |||||||  ||||| ||| ||||| ||||||||||||||||||||||||    
T  5434186 aatccttcataaccgcacaaagagatatatccaatgctttttgatctcagtactgaaagaggcactctttttattgcagtgttatttgcaagcagagtgg 5434087  T
Q  118 ttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttct 217  Q
    ||||||||| ||| ||||||||||| |||||||| |||| |||| || |||| |||| ||| ||||||||||||| |||||||||| |||| ||||||||    
T  5434086 ttaaagattccatatgttccaagtcatcttccaaattgtcaatctttaaacagccagtaaggatgagagttttcaaagatttcaacttatatatgcttct 5433987  T
Q  218 tggaaggctagaaaggcgaatacaatcttccaaatttatcag 259  Q
    ||| ||| || | |||| ||||||||||||||||||||||||    
T  5433986 tgggaggttacataggccaatacaatcttccaaatttatcag 5433945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 5157557 - 5157792
Alignment:
Q  17 aaatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtg 116  Q
    ||||||||||||||||| |||||| || ||||||||||||||||||||||| ||||||||||| || ||| ||||| ||||||  | |||||||||||||    
T  5157557 aaatccttcatagccgcccaaagagatgtatccaatgctttttgaccttactactgaaaagggtactctttttattgcagtgtcgtgtgcaagcagagtg 5157656  T
Q  117 gttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttc 216  Q
    |||||||||| ||| ||||| | ||||||||||||||||| |||||||  |||||| |||||||| | | ||||||||||||||||| ||||||||||||    
T  5157657 gttaaagattccatctgttctatgtcctcttccaacttgtcaatcattatacaccctgaaagaattaaaattttcagagatttcaacttatagatgcttc 5157756  T
Q  217 ttggaaggctagaaaggcgaatacaatcttccaaat 252  Q
    ||||||||||   ||||| || ||||||||||||||    
T  5157757 ttggaaggcttcgaaggctaacacaatcttccaaat 5157792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 5354544 - 5354785
Alignment:
Q  18 aatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtgg 117  Q
    |||||||||||||| || ||||||||||||||||||||||| || || || | ||| ||||| || ||||||||| |||||| |||||||||||| ||||    
T  5354544 aatccttcatagccacataaagaaatatatccaatgcttttggaactaactattgagaagggtactcttgttattgcagtgtcatttgcaagcagggtgg 5354643  T
Q  118 ttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttct 217  Q
    ||||||||| || ||||||||||||||||||||||||||  | | ||  ||| |||||||||||||||||||||| |||||||||| | |||||||||||    
T  5354644 ttaaagattccaattgttccaagtcctcttccaacttgtctaactttttacaaccagaaagaatgagagttttcaaagatttcaacttgtagatgcttct 5354743  T
Q  218 tggaaggctagaaaggcgaatacaatcttccaaatttatcag 259  Q
    ||| ||||||||||||  ||| || ||||  |||||||||||    
T  5354744 tgggaggctagaaaggttaatgcagtctttgaaatttatcag 5354785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 258
Target Start/End: Original strand, 5257263 - 5257504
Alignment:
Q  17 aaatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtg 116  Q
    |||||||||||| |||  |||||| | | || | ||||||||||| |||| |||||| || ||||| ||||||||| |||||||||||||||  ||||||    
T  5257263 aaatccttcataaccgtgcaaagagacaaattcgatgctttttgatcttaaaactgataatggcactcttgttattgcagtgttatttgcaattagagtg 5257362  T
Q  117 gttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttc 216  Q
    |||||||||  ||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||    
T  5257363 gttaaagatgtcatctgttctaagtcctcttccaacttgtcaatcattgaacacccagaaagaatgaaagtttttagagatttcaacttatagatgcttc 5257462  T
Q  217 ttggaaggctagaaaggcgaatacaatcttccaaatttatca 258  Q
    |||| ||     | | || |||||||||||||||||||||||    
T  5257463 ttgggagttcgcataagctaatacaatcttccaaatttatca 5257504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 5370723 - 5370488
Alignment:
Q  17 aaatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtg 116  Q
    ||||||| ||| ||| ||||| ||||| ||||||||||||||||||| ||| ||||||||||| || ||| ||||| |||||||||||||||||||||||    
T  5370723 aaatcctacatggccacacaatgaaatgtatccaatgctttttgaccgtactactgaaaagggtaccctttttattgcagtgttatttgcaagcagagtg 5370624  T
Q  117 gttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttc 216  Q
    ||||| |||| ||| ||||| |  |||||||||||||| | |||||||  |||||| |||||||| ||||| || |||||||||||| |||| |||||||    
T  5370623 gttaatgattccatctgttctatatcctcttccaacttctcaatcattacacaccctgaaagaataagagtctttagagatttcaacttataaatgcttc 5370524  T
Q  217 ttggaaggctagaaaggcgaatacaatcttccaaat 252  Q
    |||||||| ||  ||||| || ||||||||| ||||    
T  5370523 ttggaaggttacgaaggctaacacaatcttcaaaat 5370488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 5397102 - 5396893
Alignment:
Q  17 aaatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtg 116  Q
    |||||||||||| ||||||||||| ||| |||||||||||||| |||||| || |||||| ||||| ||| ||||| ||||||||||||||| ||  |||    
T  5397102 aaatccttcatatccgcacaaagagataaatccaatgctttttaaccttaaaattgaaaacggcactctttttattgcagtgttatttgcaaccaaggtg 5397003  T
Q  117 gttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttc 216  Q
    |||||||||| ||| |||||||| || |||||||| |||| ||||| | |||||||||||||||  |||||||  || ||||||||| |||| || ||||    
T  5397002 gttaaagattccatctgttccaaatcttcttccaatttgtcaatcagtaaacacccagaaagaagaagagtttgtagtgatttcaacttataaatacttc 5396903  T
Q  217 ttggaaggct 226  Q
    ||||||||||    
T  5396902 ttggaaggct 5396893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 5281451 - 5281280
Alignment:
Q  18 aatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtgg 117  Q
    ||||||| ||||||||| |||||||||||||||||| ||||  ||||| | |||| |||||| || ||||||||| |||||| ||| |||| ||| || |    
T  5281451 aatcctttatagccgcagaaagaaatatatccaatgtttttcaaccttcctactgcaaagggaactcttgttattgcagtgtcattagcaatcagggtcg 5281352  T
Q  118 ttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttt 189  Q
    |||| |||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||    
T  5281351 ttaaggattccatttgttccaagtcctcttctaacttgttaatcattgaacacccagaaagaatcagagttt 5281280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 85 - 259
Target Start/End: Complemental strand, 5447241 - 5447067
Alignment:
Q  85 ttgttattccagtgttatttgcaagcagagtggttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgag 184  Q
    ||||||||  ||||||||||||||| |||||||||||||||| |||||  || ||||||||||||| ||||| |||| || |||| |||||||||| |||    
T  5447241 ttgttattgaagtgttatttgcaagaagagtggttaaagattccattttctcgaagtcctcttccaccttgtcaatctttaaacaaccagaaagaacgag 5447142  T
Q  185 agttttcagagatttcaacgtatagatgcttcttggaaggctagaaaggcgaatacaatcttccaaatttatcag 259  Q
    |||||||| |||||||||| ||||||||||| |||| |||||| | |||| ||| || |||||||| ||||||||    
T  5447141 agttttcaaagatttcaacttatagatgctttttgggaggctacataggctaatgcagtcttccaagtttatcag 5447067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 5179692 - 5179521
Alignment:
Q  18 aatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtgg 117  Q
    ||||||| ||||||||| |||||||||||||||||| ||||  ||||| | |||| |||||| || || |||||| |||||| ||| |||| ||| || |    
T  5179692 aatcctttatagccgcagaaagaaatatatccaatgtttttcaaccttcctactgcaaagggaactctagttattgcagtgtcattagcaatcagggtcg 5179593  T
Q  118 ttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttt 189  Q
    |||| |||| ||||| ||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||    
T  5179592 ttaaggattccatttcttccaagtcctcttccaacttgttaatctttgaacacccagaaagaatcagagttt 5179521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 131 - 252
Target Start/End: Original strand, 5243910 - 5244031
Alignment:
Q  131 ttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttcttggaaggctagaa 230  Q
    |||||||||||||||||||||||| | |||||||  |||||| || ||||||| ||||||||||||||||||| ||||||||||||||||||||||   |    
T  5243910 ttgttccaagtcctcttccaacttctcaatcattatacaccctgagagaatgaaagttttcagagatttcaacttatagatgcttcttggaaggcttcga 5244009  T
Q  231 aggcgaatacaatcttccaaat 252  Q
    |||| || ||||||||||||||    
T  5244010 aggctaacacaatcttccaaat 5244031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 5243842 - 5243914
Alignment:
Q  17 aaatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgtt 89  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||    
T  5243842 aaatccttcatagccacacaaagaaatatatccgatgctttttgaccttactactgaaaagggcactcttgtt 5243914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 154; Significance: 9e-82; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 17 - 258
Target Start/End: Complemental strand, 8877761 - 8877520
Alignment:
Q  17 aaatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| || || ||| ||||| |||||||||||||||||||||||    
T  8877761 aaatccttcatagccgcacaaagaaatatatccaatgctttttgaccttactaatgaaaatggtactctttttattgcagtgttatttgcaagcagagtg 8877662  T
Q  117 gttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttc 216  Q
    |||||||||| ||| ||||| |||||||| |||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||| | || || ||||    
T  8877661 gttaaagatttcatctgttctaagtcctcctccaacttgtcaatcattgaacacccagaaagaatgagagattttagagatttcaacttgtatatacttc 8877562  T
Q  217 ttggaaggctagaaaggcgaatacaatcttccaaatttatca 258  Q
    ||||||||||   ||||| |||||||||||||||||||||||    
T  8877561 ttggaaggctccgaaggctaatacaatcttccaaatttatca 8877520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 20812302 - 20812254
Alignment:
Q  144 tcttccaacttgtgaatcattgaacacccagaaagaatgagagttttca 192  Q
    ||||||||||| | |||| ||||||| ||||||||||| ||||||||||    
T  20812302 tcttccaacttctcaatctttgaacaaccagaaagaataagagttttca 20812254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 153; Significance: 4e-81; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 4344797 - 4344557
Alignment:
Q  18 aatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtgg 117  Q
    ||||||||||| || |||||||||||| ||||||||| |||||||||||| ||||||||||| ||  |||||||  ||||||||||||||| ||||||||    
T  4344797 aatccttcatatccacacaaagaaataaatccaatgcgttttgaccttactactgaaaagggtacttttgttatagcagtgttatttgcaatcagagtgg 4344698  T
Q  118 ttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttct 217  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||| |||| ||||| |||||||||||||||||||||||||||||||||||| ||||    
T  4344697 ttaaagattccatttgttccaagtcctcttccaacttgtcaatcattaaacatccagatagaatgagagttttcagagatttcaacgtatagatgtttct 4344598  T
Q  218 tggaaggctagaaaggcgaatacaatcttccaaatttatca 258  Q
    ||||||| || |||||| |||||||| || |||||||||||    
T  4344597 tggaaggttacaaaggctaatacaatttttcaaatttatca 4344557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 4361228 - 4360988
Alignment:
Q  18 aatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtgg 117  Q
    ||||||||||| || |||||||||||| ||||||||| |||||| ||||||| ||||||||| ||  ||||||| |||||||||||||||| ||||||||    
T  4361228 aatccttcatatccacacaaagaaataaatccaatgcgttttgatcttacaattgaaaagggtacttttgttataccagtgttatttgcaatcagagtgg 4361129  T
Q  118 ttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttct 217  Q
    ||||||||| ||||||||||||||||||||||||| ||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||    
T  4361128 ttaaagattccatttgttccaagtcctcttccaacgtgtcaatcattgaacatccagatagaatgagagttttcagagatttcaacgtatagatgtttct 4361029  T
Q  218 tggaaggctagaaaggcgaatacaatcttccaaatttatca 258  Q
    ||||||| || |||||| ||| ||||||| |||||||||||    
T  4361028 tggaaggttacaaaggctaatgcaatctttcaaatttatca 4360988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 4320549 - 4320789
Alignment:
Q  18 aatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtgg 117  Q
    ||||||||||| || |||| ||||||| |||||||||||||||||||||| | ||||||||| ||  ||||||| ||||| |||||||||| ||| ||||    
T  4320549 aatccttcatatccacacagagaaataaatccaatgctttttgaccttactaatgaaaagggaacttttgttataccagtattatttgcaatcagggtgg 4320648  T
Q  118 ttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttct 217  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||| |||| || || ||||||||||| ||||||| |||||||||||||||| ||||    
T  4320649 ttaaagattccatttgttccaagtcctcttccaacttgtcaatcattaaacatcccgatagaatgagagtattcagagttttcaacgtatagatgtttct 4320748  T
Q  218 tggaaggctagaaaggcgaatacaatcttccaaatttatca 258  Q
    |||||||||| |||||| ||||||||||| |||||||||||    
T  4320749 tggaaggctacaaaggctaatacaatctttcaaatttatca 4320789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 4123869 - 4124109
Alignment:
Q  18 aatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtgg 117  Q
    ||||||||||| || |||| ||||||| |||||||||||||||||||||| || |||||||||||  |||||||  |||| |||||||||| ||||||||    
T  4123869 aatccttcatatccacacagagaaataaatccaatgctttttgaccttactaccgaaaagggcacttttgttatagcagtattatttgcaatcagagtgg 4123968  T
Q  118 ttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttct 217  Q
    ||||||||| |||||||||||| |||||||||||||||| ||||||| |||| || || |||||||||||||||||||||||||||| ||| ||| ||||    
T  4123969 ttaaagattccatttgttccaactcctcttccaacttgtcaatcattaaacatcccgatagaatgagagttttcagagatttcaacgaataaatgtttct 4124068  T
Q  218 tggaaggctagaaaggcgaatacaatcttccaaatttatca 258  Q
    ||||||| ||||||||| | ||||||||| |||||||||||    
T  4124069 tggaaggttagaaaggctagtacaatctttcaaatttatca 4124109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 4335496 - 4335256
Alignment:
Q  18 aatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtgg 117  Q
    ||||||||||| || |||||||| ||||| ||||||||||||||| |||| ||||||||||||||  ||||||| |||||||||| ||| |  |||||||    
T  4335496 aatccttcatacccacacaaagagatatagccaatgctttttgactttactactgaaaagggcacttttgttataccagtgttatctgccatgagagtgg 4335397  T
Q  118 ttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttct 217  Q
    ||||||||| ||||||||||||||||||||||||||||| |||| || |||| || || |||||||||||||||||||| ||||||||||||||| ||||    
T  4335396 ttaaagattccatttgttccaagtcctcttccaacttgtcaatctttaaacatcctgatagaatgagagttttcagagacttcaacgtatagatgtttct 4335297  T
Q  218 tggaaggctagaaaggcgaatacaatcttccaaatttatca 258  Q
    ||||||| || |||||| ||| ||||||| |||||||||||    
T  4335296 tggaaggttacaaaggctaatgcaatctttcaaatttatca 4335256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 38 - 256
Target Start/End: Original strand, 4133375 - 4133591
Alignment:
Q  38 agaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtggttaaagattgcatttgttcc 137  Q
    |||||||||| ||||||||||||||||| | ||||||||||||||  |||||||| |||||||||   ||| ||||||||||||||| | ||||||||||    
T  4133375 agaaatatattcaatgctttttgaccttgcgactgaaaagggcacttttgttattgcagtgttatccacaatcagagtggttaaagactccatttgttcc 4133474  T
Q  138 aagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttcttggaaggctagaaaggcgaa 237  Q
    |||||  ||||||| |||| ||| ||| |||| ||||||||||| |||||||||||||||||||||| ||||||| ||||||||||| ||  ||||| |     
T  4133475 aagtc--cttccaatttgtcaataattaaacagccagaaagaataagagttttcagagatttcaacgaatagatggttcttggaaggttacgaaggctag 4133572  T
Q  238 tacaatcttccaaatttat 256  Q
    |||| |||| |||||||||    
T  4133573 tacagtctttcaaatttat 4133591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 6621436 - 6621642
Alignment:
Q  17 aaatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtg 116  Q
    |||||||||| | || || |||||||||||||||||| |||| || | ||| | ||||||||| ||  |||||||  |||| ||||  |||| ||  ||     
T  6621436 aaatccttcaaatccacataaagaaatatatccaatgtttttagatcgtactattgaaaagggaacttttgttatagcagtcttatccgcaatcaaggtt 6621535  T
Q  117 gttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttc 216  Q
    || || |||| ||| |||||||||||||| ||||| |||| |||||| ||||| || |||||||| | |||||  |||||||| ||  ||||||||||||    
T  6621536 gtcaatgattccatctgttccaagtcctcctccaatttgtcaatcatggaacatcctgaaagaattaaagtttctagagattttaatttatagatgcttc 6621635  T
Q  217 ttggaag 223  Q
    |||||||    
T  6621636 ttggaag 6621642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 6815622 - 6815416
Alignment:
Q  17 aaatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtg 116  Q
    |||||||||| |||| |  |||||||||||||||||||||||  | ||||| |||||||| |||||  || ||||  |||| ||||  |||| ||  ||     
T  6815622 aaatccttcaaagccacctaaagaaatatatccaatgcttttcaatcttaccactgaaaatggcactttttttatagcagtcttatcagcaatcaaggta 6815523  T
Q  117 gttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttc 216  Q
     | ||||||| ||| |||||||||||||| ||||| || | |||||| ||||| ||||||||||| | |||||  |||||||| ||  ||||| ||||||    
T  6815522 atcaaagattccatctgttccaagtcctcctccaatttttcaatcatggaacatccagaaagaatcaaagtttctagagattttaatttatagttgcttc 6815423  T
Q  217 ttggaag 223  Q
    |||||||    
T  6815422 ttggaag 6815416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 223
Target Start/End: Original strand, 7885341 - 7885526
Alignment:
Q  38 agaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtggttaaagattgcatttgttcc 137  Q
    ||||||| || ||||||||||||| ||||| |||| ||||||||| ||||| ||  |||||| ||  |||| ||  ||||||||||||| |||||||||     
T  7885341 agaaataaatgcaatgctttttgatcttactactgcaaagggcactcttgtgatagcagtgtcatccgcaaccaaggtggttaaagatttcatttgttct 7885440  T
Q  138 aagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttcttggaag 223  Q
    |  |||||||| ||||||| |||  ||| ||| ||||| |||||||| |||||||| || |  ||| |||| ||||| ||||||||    
T  7885441 atatcctcttctaacttgtcaatttttgtacatccagacagaatgagtgttttcagcgagtctaacttatatatgctccttggaag 7885526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 36 - 224
Target Start/End: Original strand, 6498474 - 6498662
Alignment:
Q  36 aaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtggttaaagattgcatttgtt 135  Q
    |||||||| ||||||||||||||||| ||||| | ||||||||| ||  |||||||  |||| ||||  |||| ||  || || || |||| ||| ||||    
T  6498474 aaagaaatgtatccaatgctttttgatcttactattgaaaagggaacttttgttatagcagtcttatccgcaatcaaggttgtcaatgattccatctgtt 6498573  T
Q  136 ccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttcttggaagg 224  Q
    ||| |||||| ||||| |||| |||| | ||||| ||||||||||| | |||||  |||||||| ||  ||||||||||||| ||||||    
T  6498574 ccacgtcctcctccaatttgtcaatcttggaacatccagaaagaatcaaagtttctagagattttaatttatagatgcttctcggaagg 6498662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 199
Target Start/End: Complemental strand, 6753112 - 6752930
Alignment:
Q  17 aaatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtg 116  Q
    |||||||||| |||| |  |||||||||||||||||||||||  | ||||| | ||||||||||||  |||||||  |||| ||||  |||| ||  ||     
T  6753112 aaatccttcaaagccacgaaaagaaatatatccaatgcttttcaatcttactattgaaaagggcacttttgttatagcagtcttatccgcaatcaaggta 6753013  T
Q  117 gttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagattt 199  Q
     | || |||| ||| |||||||||||||| ||||| |||| |||||| ||||| ||||||||||| | |||||  ||||||||    
T  6753012 atcaatgattccatctgttccaagtcctcctccaatttgtcaatcatggaacatccagaaagaatcaaagtttctagagattt 6752930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 6796939 - 6796733
Alignment:
Q  17 aaatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtg 116  Q
    |||||||||| |||| || |||||||||||||||||  ||||  | ||||| | |||||| |||||  |||| ||   ||| |||| ||||| || |||     
T  6796939 aaatccttcaaagccacaaaaagaaatatatccaatatttttcaatcttactattgaaaatggcacttttgtgatagaagtcttatctgcaatcaaagta 6796840  T
Q  117 gttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttc 216  Q
     | || |||| ||| |||||||||||||| ||||| || | |||||| | ||| ||||||||||| | |||||  |||||||| || |||||||||||||    
T  6796839 atcaatgattccatctgttccaagtcctcctccaatttttcaatcatggtacatccagaaagaatcaaagtttctagagattttaatgtatagatgcttc 6796740  T
Q  217 ttggaag 223  Q
    |||||||    
T  6796739 ttggaag 6796733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 6728558 - 6728352
Alignment:
Q  17 aaatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtg 116  Q
    |||||||||| |||| |  ||||||||||||||||| |||||  | ||||| | |||||| |||||  |||||||  |||| ||||  |||| ||  ||     
T  6728558 aaatccttcaaagccacgaaaagaaatatatccaatacttttcaatcttactattgaaaatggcacttttgttatagcagtcttatccgcaatcaaggtt 6728459  T
Q  117 gttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttc 216  Q
    || || |||| ||| ||||||| |||||| ||||| |||| |||||| ||||| || |||||||| | |||||  |||||||| ||| | |||||| |||    
T  6728458 gtcaatgattccatctgttccacgtcctcctccaatttgtcaatcatggaacatcctgaaagaatcaaagtttctagagattttaacttgtagatgtttc 6728359  T
Q  217 ttggaag 223  Q
    |||||||    
T  6728358 ttggaag 6728352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 6545377 - 6545575
Alignment:
Q  17 aaatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtg 116  Q
    |||||||||| |||| |  |||||||||||||||||||||||  | || || | ||||||||||||  |||||||  |||| ||||  |||| ||  ||     
T  6545377 aaatccttcaaagccacgaaaagaaatatatccaatgcttttcaatctaactattgaaaagggcacttttgttatagcagtcttatccgcaatcaaggtt 6545476  T
Q  117 gttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgctt 215  Q
     | || |||| ||| |||||||||||||| ||||| |||| |||| | ||||| || |||||||| | |||||  |||||||| ||  |||||||||||    
T  6545477 ttcaacgattccatctgttccaagtcctcctccaatttgttaatcttggaacatcccgaaagaatcaaagtttctagagattttaatttatagatgctt 6545575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 6651219 - 6651013
Alignment:
Q  17 aaatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtg 116  Q
    |||||||||| |||| || | |||||||||||||||| || || | ||||| | |||||| |||||  |||||||  |||| ||||  |||| ||  ||     
T  6651219 aaatccttcaaagccacatagagaaatatatccaatgtttcttaatcttactattgaaaacggcacttttgttatagcagtcttatccgcaatcaaggtt 6651120  T
Q  117 gttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttc 216  Q
     | || |||| ||| |||||||||||||| ||||| |||| |||| | ||||| ||||||||||| | |||||  |||||||| ||  |||| |||||||    
T  6651119 ttcaatgattccatctgttccaagtcctcctccaatttgtcaatcttggaacatccagaaagaatcaaagtttctagagattttaatttatatatgcttc 6651020  T
Q  217 ttggaag 223  Q
    | |||||    
T  6651019 taggaag 6651013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 6837426 - 6837220
Alignment:
Q  17 aaatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtg 116  Q
    |||||||||| ||||||  |||||||||||||||||| ||||    ||||| | |||||| || ||  || ||||  |||| |||| ||||| ||  ||     
T  6837426 aaatccttcaaagccgcttaaagaaatatatccaatgtttttcattcttactattgaaaatggaactttttttatagcagtcttatctgcaatcaaggta 6837327  T
Q  117 gttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttc 216  Q
     | | ||||| ||| ||| |||| ||||| ||||| |||| |||||| ||||| ||||||||||| | |||||  |||||||| || |||||||||||||    
T  6837326 ataagagattccatctgtaccaaatcctcctccaatttgtcaatcatggaacatccagaaagaatcaaagtttgtagagattttaatgtatagatgcttc 6837227  T
Q  217 ttggaag 223  Q
    | |||||    
T  6837226 tcggaag 6837220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 6588125 - 6588328
Alignment:
Q  17 aaatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtg 116  Q
    |||||||||| |||| || |||||||||||||||||||||||   |||||| | |||||| |||||  |||| ||  |||| ||||  |||| ||  ||     
T  6588125 aaatccttcaaagccacaaaaagaaatatatccaatgcttttcatccttactattgaaaatggcacttttgtgatggcagtcttatcggcaatcaaggta 6588224  T
Q  117 gttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttc 216  Q
     | || |||| ||| |||||||||||||| ||||  || | |||||| ||||| ||||||||||| | |||||  |  ||||| ||  ||||||||||||    
T  6588225 atcaacgattccatctgttccaagtcctcctccagtttttcaatcatagaacatccagaaagaatcaaagtttctaacgattttaatttatagatgcttc 6588324  T
Q  217 ttgg 220  Q
    ||||    
T  6588325 ttgg 6588328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 6822843 - 6822802
Alignment:
Q  17 aaatccttcatagccgcacaaagaaatatatccaatgctttt 58  Q
    |||||||||| ||||||| |||||||||||||||||||||||    
T  6822843 aaatccttcaaagccgcataaagaaatatatccaatgctttt 6822802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 8830 - 9064
Alignment:
Q  18 aatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtgg 117  Q
    |||||||||| ||||||||||||||||||| |||| |||||||||||||| | |||||||||||| ||||||| | ||||||||| ||||||||||||||    
T  8830 aatccttcatggccgcacaaagaaatatatacaatactttttgaccttactattgaaaagggcactcttgttaatgcagtgttatctgcaagcagagtgg 8929  T
Q  118 ttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttct 217  Q
    ||||||||| ||| ||||| | ||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8930 ttaaagattccatctgttctatgtcctcttccaacttgtcaatcattatacacccagaaagaatgagagttttcagagatttcaacttatagatgcttct 9029  T
Q  218 tggaaggctagaaaggcgaatacaatcttccaaat 252  Q
    ||||||||||  ||||| || ||||||||||||||    
T  9030 tggaaggctacgaaggctaacacaatcttccaaat 9064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 36213759 - 36213997
Alignment:
Q  18 aatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtgg 117  Q
    ||||||||||||||||||||||| |||||  | |||||||| || ||||| |||||||| ||||| ||||||||| ||||||||||||||| ||  ||||    
T  36213759 aatccttcatagccgcacaaagatatataagcgatgcttttagatcttactactgaaaatggcactcttgttattgcagtgttatttgcaatcaaggtgg 36213858  T
Q  118 ttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttct 217  Q
    ||||||||| ||| ||||||| |||||||||||| |||| |||| ||||||| |||||||||||||||||||| ||  |||| ||| ||||||| | | |    
T  36213859 ttaaagattccatctgttccatgtcctcttccaatttgtcaatctttgaacatccagaaagaatgagagttttaagtaattttaacttatagataccttt 36213958  T
Q  218 tggaaggctagaaaggcgaatacaatcttccaaatttat 256  Q
     ||||||||   ||||| |||||||||||||||||||||    
T  36213959 aggaaggctttgaaggctaatacaatcttccaaatttat 36213997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 18935537 - 18935332
Alignment:
Q  18 aatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtgg 117  Q
    ||||||||| | || ||||  |||||| |||||||||||||||| ||||| |||| ||||||||| |||||||   |||| ||||  |||| ||| ||||    
T  18935537 aatccttcaaatccacacagtgaaataaatccaatgctttttgatcttactactgcaaagggcactcttgttacagcagtcttatccgcaaccagggtgg 18935438  T
Q  118 ttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttct 217  Q
    | ||||||  ||| ||||| | ||||||||||||||||| |||  ||| ||| ||||| | |||||||| ||| |  || |  ||  |||||||||||||    
T  18935437 tcaaagatgtcatctgttctatgtcctcttccaacttgtcaatttttgtacatccagataaaatgagagctttgaccgactctaatttatagatgcttct 18935338  T
Q  218 tggaag 223  Q
    ||||||    
T  18935337 tggaag 18935332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 223
Target Start/End: Original strand, 34724537 - 34724721
Alignment:
Q  39 gaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtggttaaagattgcatttgttcca 138  Q
    |||||| |||||||||||||||| ||||| |||| ||| || || |||||||    ||| ||||  ||||  ||| |||| |||||   ||||||||| |    
T  34724537 gaaataaatccaatgctttttgatcttactactgcaaatggaacccttgttacagaagtcttatccgcaactagaatggtcaaagaagtcatttgttcta 34724636  T
Q  139 agtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttcttggaag 223  Q
     ||||||||||||||||| |||  ||| ||| ||||| | |||||||||||| |  || |||||  |||||||||||||||||||    
T  34724637 tgtcctcttccaacttgtcaatttttgtacatccagacacaatgagagtttttactgacttcaatttatagatgcttcttggaag 34724721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 20 - 256
Target Start/End: Original strand, 22584146 - 22584382
Alignment:
Q  20 tccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtggtt 119  Q
    |||||||||||| ||||||||||| || | |||  |||||||||| |  | |||||| |||||  || ||||| |||| | |||||||||||||||||||    
T  22584146 tccttcatagccacacaaagaaatgtaccaaatagtttttgacctaaatattgaaaatggcactttttttattgcagtttcatttgcaagcagagtggtt 22584245  T
Q  120 aaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttcttg 219  Q
    ||||||| ||||||||||||||||||||||||||| | ||   || |||| |||||||||||||||||||||| |||||||||| | |||||| ||||||    
T  22584246 aaagattccatttgttccaagtcctcttccaacttataaagtttttaacagccagaaagaatgagagttttcaaagatttcaacttgtagatgtttcttg 22584345  T
Q  220 gaaggctagaaaggcgaatacaatcttccaaatttat 256  Q
    | |||||| ||||||  | ||| |||| |||||||||    
T  22584346 ggaggctacaaaggcttaaacagtcttgcaaatttat 22584382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 14767123 - 14767181
Alignment:
Q  144 tcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaa 202  Q
    |||||||| |||| |||| ||||||| || ||||| ||||||||||||| |||||||||    
T  14767123 tcttccaatttgtcaatctttgaacagccggaaaggatgagagttttcaaagatttcaa 14767181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 59 - 259
Target Start/End: Original strand, 47986823 - 47987023
Alignment:
Q  59 tgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtggttaaagattgcatttgttccaagtcctcttccaacttgtga 158  Q
    |||||| || ||||| || ||||| ||||||||  ||||||||||||||| || ||| |||||||||| ||||| ||||| ||||||||||||||||| |    
T  47986823 tgacctcactactgataaaggcactcttgttatcgcagtgttatttgcaaccaaagtagttaaagatttcatttattccatgtcctcttccaacttgtta 47986922  T
Q  159 atcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttcttggaaggctagaaaggcgaatacaatcttccaaatttatca 258  Q
    ||| || |||| |||||||||||||||||||| |||||||| ||  | ||  |||||||||| |||||| | |||| |||||| ||||||||||||||||    
T  47986923 atctttaaacagccagaaagaatgagagtttttagagattttaatttgtatgtgcttcttgggaggctacataggctaatacagtcttccaaatttatca 47987022  T
Q  259 g 259  Q
    |    
T  47987023 g 47987023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 59 - 259
Target Start/End: Original strand, 47996110 - 47996310
Alignment:
Q  59 tgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtggttaaagattgcatttgttccaagtcctcttccaacttgtga 158  Q
    |||||| || ||||| || ||||| ||||||||  ||||||||||||||| || ||| |||||||||| ||||| ||||| ||||||||||||||||| |    
T  47996110 tgacctcactactgataaaggcactcttgttatcgcagtgttatttgcaaccaaagtagttaaagatttcatttattccatgtcctcttccaacttgtta 47996209  T
Q  159 atcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttcttggaaggctagaaaggcgaatacaatcttccaaatttatca 258  Q
    ||| || |||| |||||||||||||||||||| |||||||| ||  | ||  |||||||||| |||||| | |||| |||||| ||||||||||||||||    
T  47996210 atctttaaacagccagaaagaatgagagtttttagagattttaatttgtatgtgcttcttgggaggctacataggctaatacagtcttccaaatttatca 47996309  T
Q  259 g 259  Q
    |    
T  47996310 g 47996310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 59 - 259
Target Start/End: Original strand, 48005397 - 48005597
Alignment:
Q  59 tgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtggttaaagattgcatttgttccaagtcctcttccaacttgtga 158  Q
    |||||| || ||||| || ||||| ||||||||  ||||||||||||||| || ||| |||||||||| ||||| ||||| ||||||||||||||||| |    
T  48005397 tgacctcactactgataaaggcactcttgttatcgcagtgttatttgcaaccaaagtagttaaagatttcatttattccatgtcctcttccaacttgtta 48005496  T
Q  159 atcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttcttggaaggctagaaaggcgaatacaatcttccaaatttatca 258  Q
    ||| || |||| |||||||||||||||||||| |||||||| ||  | ||  |||||||||| |||||| | |||| |||||| ||||||||||||||||    
T  48005497 atctttaaacagccagaaagaatgagagtttttagagattttaatttgtatgtgcttcttgggaggctacataggctaatacagtcttccaaatttatca 48005596  T
Q  259 g 259  Q
    |    
T  48005597 g 48005597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 59 - 259
Target Start/End: Original strand, 48014682 - 48014882
Alignment:
Q  59 tgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtggttaaagattgcatttgttccaagtcctcttccaacttgtga 158  Q
    |||||| || ||||| || ||||| ||||||||  ||||||||||||||| || ||| |||||||||| ||||| ||||| ||||||||||||||||| |    
T  48014682 tgacctcactactgataaaggcactcttgttatcgcagtgttatttgcaaccaaagtagttaaagatttcatttattccatgtcctcttccaacttgtta 48014781  T
Q  159 atcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttcttggaaggctagaaaggcgaatacaatcttccaaatttatca 258  Q
    ||| || |||| |||||||||||||||||||| |||||||| ||  | ||  |||||||||| |||||| | |||| |||||| ||||||||||||||||    
T  48014782 atctttaaacagccagaaagaatgagagtttttagagattttaatttgtatgtgcttcttgggaggctacataggctaatacagtcttccaaatttatca 48014881  T
Q  259 g 259  Q
    |    
T  48014882 g 48014882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 32411256 - 32411314
Alignment:
Q  144 tcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaa 202  Q
    |||||||| || | |||| ||||||| |||||||| ||||||||||||| |||||||||    
T  32411256 tcttccaagttttcaatctttgaacaaccagaaaggatgagagttttcaaagatttcaa 32411314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0552 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 8214 - 8420
Alignment:
Q  17 aaatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtg 116  Q
    |||||||||| |||| |  |||||||||||||||||| ||||  | ||||| |||||||| |||||  || ||||  |||| ||||  |||| ||  ||     
T  8214 aaatccttcaaagccacctaaagaaatatatccaatggttttcaatcttaccactgaaaatggcactttttttatagcagtcttatcagcaatcaaggta 8313  T
Q  117 gttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttc 216  Q
     | ||||||| ||| |||||||||||||| ||||| || | |||||| ||||| ||||||||||| | |||||  |||||||| ||  ||||| ||||||    
T  8314 atcaaagattccatctgttccaagtcctcctccaatttttcaatcatggaacatccagaaagaatcaaagtttctagagattttaatttatagttgcttc 8413  T
Q  217 ttggaag 223  Q
    |||||||    
T  8414 ttggaag 8420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0813 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0813
Description:

Target: scaffold0813; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 4755 - 4961
Alignment:
Q  17 aaatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtg 116  Q
    |||||||||| |||| || | |||||||||||||||| || || | ||||| | |||||| |||||  |||||||  |||| ||||  |||| ||  ||     
T  4755 aaatccttcaaagccacatagagaaatatatccaatgtttcttaatcttactattgaaaacggcacttttgttatagcagtcttatccgcaatcaaggtt 4854  T
Q  117 gttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttc 216  Q
     | || |||| ||| |||||||||||||| ||||| |||| |||| | ||||| ||||||||||| | |||||  |||||||| ||  |||| |||||||    
T  4855 ttcaatgattccatctgttccaagtcctcctccaatttgtcaatcttggaacatccagaaagaatcaaagtttctagagattttaatttatatatgcttc 4954  T
Q  217 ttggaag 223  Q
    | |||||    
T  4955 taggaag 4961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 9842 - 9636
Alignment:
Q  17 aaatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtg 116  Q
    |||||||||| ||||||  |||||||||||||||||| ||||    ||||| | |||||| || ||  || ||||  |||| |||| ||||| ||  ||     
T  9842 aaatccttcaaagccgcttaaagaaatatatccaatgtttttcattcttactattgaaaatggaactttttttatagcagtcttatctgcaatcaaggta 9743  T
Q  117 gttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttc 216  Q
     | | ||||| ||| ||| |||| ||||| ||||| |||| |||||| ||||| ||||||||||| | |||||  |||||||| || |||||||||||||    
T  9742 ataagagattccatctgtaccaaatcctcctccaatttgtcaatcatggaacatccagaaagaatcaaagtttgtagagattttaatgtatagatgcttc 9643  T
Q  217 ttggaag 223  Q
    | |||||    
T  9642 tcggaag 9636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 6811 - 6605
Alignment:
Q  17 aaatccttcatagccgcacaaagaaatatatccaatgctttttgaccttacaactgaaaagggcacacttgttattccagtgttatttgcaagcagagtg 116  Q
    |||||||||| | || || |||||||||||||||||| |||| || | ||| | ||||||||| ||  |||||||  |||| ||||  |||| ||  ||     
T  6811 aaatccttcaaatccacataaagaaatatatccaatgtttttagatcgtactattgaaaagggaacttttgttatagcagtcttatccgcaatcaaggtt 6712  T
Q  117 gttaaagattgcatttgttccaagtcctcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaacgtatagatgcttc 216  Q
     | || |||| ||| |||||||||||||| ||||| |||| |||| | ||||| ||||||||||| | |||||  |||||||| ||  |||| |||||||    
T  6711 ttcaatgattccatctgttccaagtcctcctccaatttgtcaatcttggaacatccagaaagaatcaaagtttctagagattttaatttatatatgcttc 6612  T
Q  217 ttggaag 223  Q
    | |||||    
T  6611 taggaag 6605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 3286691 - 3286748
Alignment:
Q  144 tcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttca 201  Q
    ||||||||||||| |||| ||||||| |||||||| |||||||| |||| ||||||||    
T  3286691 tcttccaacttgtcaatctttgaacaaccagaaaggatgagagtgttcaaagatttca 3286748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 31175872 - 31175824
Alignment:
Q  144 tcttccaacttgtgaatcattgaacacccagaaagaatgagagttttca 192  Q
    |||||||| |||| |||||||||||| ||||||||||||||| ||||||    
T  31175872 tcttccaatttgtcaatcattgaacaaccagaaagaatgagacttttca 31175824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 3262802 - 3262860
Alignment:
Q  144 tcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaa 202  Q
    |||||||| |||| |||| |||| || |||||||| ||||||||||||| |||||||||    
T  3262802 tcttccaatttgtcaatctttgagcaaccagaaagtatgagagttttcaaagatttcaa 3262860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 3398696 - 3398754
Alignment:
Q  144 tcttccaacttgtgaatcattgaacacccagaaagaatgagagttttcagagatttcaa 202  Q
    |||||||| |||| |||| ||||||| ||||||| ||||||||||||||  ||||||||    
T  3398696 tcttccaatttgtcaatctttgaacaaccagaaataatgagagttttcactgatttcaa 3398754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 3375103 - 3375055
Alignment:
Q  144 tcttccaacttgtgaatcattgaacacccagaaagaatgagagttttca 192  Q
    ||||||||||||| |||| ||||||| |||||||| || ||||||||||    
T  3375103 tcttccaacttgttaatctttgaacaaccagaaagtataagagttttca 3375055  T

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