View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_high_11 (Length: 585)
Name: NF20665_high_11
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_high_11 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 542; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 12 - 585
Target Start/End: Complemental strand, 36045740 - 36045167
Alignment:
| Q |
12 |
cataagatatccaatttataccaaaaaagaataaatatgctatatccatgaatttaagcaacatctttcgaaatttctttagaacagttcactatctcac |
111 |
Q |
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| T |
36045740 |
cataagatatccaatttataccaaaaaagaataaatatgctatatccatgaatttaagcaacatctttcgaaatttctttagaacagttcactatctcac |
36045641 |
T |
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| Q |
112 |
aaaacagaatcattgtctaagagacacaccaaacatttacccaaaattatgttcgaaaaccacaatattcaactcaaattaataatcacaaggcagccgg |
211 |
Q |
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| T |
36045640 |
aaaacagaaccattgtctaggagacacaccaaacatttacccaaaattctgttcgaaaaccacaacattcaactcaaattaataatcacaaggcagccgg |
36045541 |
T |
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| Q |
212 |
taacttgggccttacgcaggaaactaatagtatagtcgcaaatattaaactggaaacgaacaaataaaaactcgacgttgatagaattactcttccatga |
311 |
Q |
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| T |
36045540 |
taacttgggccttacgcaggaaactaatagtatagtcgcaaatattaaactggaaacgaacaaataaaaactcaatgttgatagaattactcttccatga |
36045441 |
T |
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| Q |
312 |
gaggattctcttgttgttgttgggaaaccttgacttggatcttctcgggttgtactgcggaaggagctttgaccatatggatgctctgctccaactcctc |
411 |
Q |
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| T |
36045440 |
gaggattctcttgttgttgttgggaaaccttgacttggatcttctcgggttgtactgcggaaggagctttgaccatatggatgctctgctccaactcctc |
36045341 |
T |
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| Q |
412 |
ctttgcctccctctgcactttcttcttgttgccttccatcctattgaagtttttacaaaatgtaagcaacaaaccaaaagaaaacacctcgaaatcacaa |
511 |
Q |
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| T |
36045340 |
ctttgcctccctctgcactttcttcttgttgccttccatcctattgaagtttttacaaaatgtcagcaacaaaccaaaagaaaacacctcgaaatcacaa |
36045241 |
T |
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| Q |
512 |
agcttggcaaaagacgtatatatacgatacaagtaggagtcaaacaagaacctcttcttatggagtctcccttc |
585 |
Q |
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| T |
36045240 |
agcttggcaaaagacatatatatacgatacaagtaggagtcaaacaagaacctcttcttatggagtctcccttc |
36045167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 40 - 327
Target Start/End: Complemental strand, 36047029 - 36046742
Alignment:
| Q |
40 |
gaataaatatgctatatccatgaatttaagcaacatctttcgaaatttctttagaacagttcactatctcacaaaacagaatcattgtctaagagacaca |
139 |
Q |
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| T |
36047029 |
gaataaatatgctatatccatgaatttaagcaacatctttcaaaatttctttagaacagttcgctatctcaccaaacagaaacattgtctaagagacacg |
36046930 |
T |
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| Q |
140 |
ccaaacatttacccaaaattatgttcgaaaaccacaatattcaactcaaattaataatcacaaggcagccggtaacttgggccttacgcaggaaactaat |
239 |
Q |
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| T |
36046929 |
ccaaacatttacccaaaattctgttcgaaaaacataacattcaactcaaattaataatcacaaggcaaccggtaacttaggccttatgcaggaaactaat |
36046830 |
T |
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| Q |
240 |
agtatagtcgcaaatattaaactggaaacgaacaaataaaaactcgacgttgatagaattactcttccatgagaggattctcttgttg |
327 |
Q |
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| T |
36046829 |
agtatagtcacaaatattaaactggaaacgaacaaacaaaaatttgatgatgttagaattactcttccatgagaggattctcttgttg |
36046742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 42 - 157
Target Start/End: Complemental strand, 36048258 - 36048143
Alignment:
| Q |
42 |
ataaatatgctatatccatgaatttaagcaacatctttcgaaatttctttagaacagttcactatctcacaaaacagaatcattgtctaagagacacacc |
141 |
Q |
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| T |
36048258 |
ataaatatactctatccatgaatttaagcagcatctttcaaaatttctttagaacagttcgctatctcaccaaacagaaacattgtctaagagacacgcc |
36048159 |
T |
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| Q |
142 |
aaacatttacccaaaa |
157 |
Q |
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| T |
36048158 |
aaacatttacccaaaa |
36048143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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