View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_high_113 (Length: 266)
Name: NF20665_high_113
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_high_113 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 256
Target Start/End: Original strand, 20189302 - 20189542
Alignment:
| Q |
16 |
cacacacaagatccaaatacttctgatgcattgccattacttaattagtgattgacctcaagtaagcggagttggtttttcgttgtagggggacattcat |
115 |
Q |
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| T |
20189302 |
cacacacaagatctaaatacttctgatgcattgccattacttaattagtgattgacctcaagtaagcggagttggtttttcattgtagcgggacattcat |
20189401 |
T |
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| Q |
116 |
tttttcacgcaagattgagctacctccaacaactctaggaatcaaacttaagtaannnnnnnggaggagagtcatattaccaaatataaactctcccaac |
215 |
Q |
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| T |
20189402 |
tttttcacgcaagattgagctacctccaacaactctaggaatcaaacttaagtaatttttctggaggagagtcatattaccaaatataaactctcccaac |
20189501 |
T |
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| Q |
216 |
actattctggtcttaaggcttgtatatttatgctgatgatg |
256 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |
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| T |
20189502 |
actattctggtcttaaggcttgtatatttatgctaatgatg |
20189542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 256
Target Start/End: Original strand, 44273814 - 44274054
Alignment:
| Q |
16 |
cacacacaagatccaaatacttctgatgcattgccattacttaattagtgattgacctcaagtaagcggagttggtttttcgttgtagggggacattcat |
115 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
44273814 |
cacacacaagatctaaatacttctgatgcattgccattacttaattagtgattgacctcaagtaagcggagttggtttttcattgtagcgggacattcat |
44273913 |
T |
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| Q |
116 |
tttttcacgcaagattgagctacctccaacaactctaggaatcaaacttaagtaannnnnnnggaggagagtcatattaccaaatataaactctcccaac |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
44273914 |
tttttcacgcaagattgagctacctccaacaactctaggaatcaaacttaagtaatttttctggaggagagtcatattaccaaatataaactctcccaac |
44274013 |
T |
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| Q |
216 |
actattctggtcttaaggcttgtatatttatgctgatgatg |
256 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |
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| T |
44274014 |
actattctggtcttaaggcttgtatatttatgctaatgatg |
44274054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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