View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_high_12 (Length: 582)
Name: NF20665_high_12
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 351 - 573
Target Start/End: Complemental strand, 8170003 - 8169781
Alignment:
| Q |
351 |
aaaaacgttctccctctacaatcttcttggctgaaacccatcagatatgtcatcgatccaacttctaaatgaaaacaagtatgattttccacttctccga |
450 |
Q |
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| T |
8170003 |
aaaaaagttctccctctacaatcttcttggctgaaacccatcagatatgtcaccgatccaacttctaactgaaaacaagtatgattttccacttctccga |
8169904 |
T |
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| Q |
451 |
aaatagttcttcgataattcatatacccattgtcattgtcagtccattccctttctttatatccttttcattccttcttcaattgaaaatattccaatcg |
550 |
Q |
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| T |
8169903 |
aaatagttcttcgataattcatatacccattgtcattgtcagtccattccctttctttatatccttttcattccttcttcagttgaaaatattccaatcg |
8169804 |
T |
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| Q |
551 |
accaatcctgttctgatgatgtc |
573 |
Q |
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| T |
8169803 |
accaatcatgttctgttgatgtc |
8169781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 20 - 149
Target Start/End: Complemental strand, 8172799 - 8172670
Alignment:
| Q |
20 |
gcatcatcttgattcacaccatagttcttgttcagcatgttattttgtttttcagccattgcaaaacataataataggattgcagccaccacgctttgtt |
119 |
Q |
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| T |
8172799 |
gcatcatcttgattcacaccatagttcttgttcagcatgttattttgtttttcggccattgcaaaagataataatatgattgcagccaccacgctttgtt |
8172700 |
T |
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| Q |
120 |
gtgttaccttgctatgctgatatatatata |
149 |
Q |
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| T |
8172699 |
atgttaccttgctatgctgatatatatata |
8172670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 7591115 - 7591014
Alignment:
| Q |
20 |
gcatcatcttgattcacaccatagttcttgttcagcatgttattttgtttttcagccattgcaaaacataataataggattgcagccaccacgctttgtt |
119 |
Q |
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| T |
7591115 |
gcatcatcttgattcacaccatagttcttgttcagcacgttattttgtttttcagccattgctaaa---gataataggattgaagccaccacgctttgtt |
7591019 |
T |
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| Q |
120 |
gtgtt |
124 |
Q |
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||||| |
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| T |
7591018 |
gtgtt |
7591014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 268 - 353
Target Start/End: Complemental strand, 8172544 - 8172461
Alignment:
| Q |
268 |
aaaaactaatatattaata-cttttctaggttctaaaacctacaacnnnnnnnnnnttgtacatagaaatattgacgggaatataaa |
353 |
Q |
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| T |
8172544 |
aaaaactaatatattaataacttttctaggttctaaaacctacaa---aaaaaaaattgtacatagaaatattgacgggaatataaa |
8172461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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