View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_high_138 (Length: 250)
Name: NF20665_high_138
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_high_138 |
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Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 95 - 240
Target Start/End: Original strand, 8447102 - 8447246
Alignment:
| Q |
95 |
ctgttttcttgcaccccgtccatttttcctattttacccatgttcttattatacagtctcaaatgtttttatgaaatttgtattatataattcaaaaact |
194 |
Q |
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| T |
8447102 |
ctgttttctcgcaccc-gttcatttttcctattttacccatgttcatattatatagtctcaaatgtttttatgaaatttgtattatataattcaaaaact |
8447200 |
T |
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| Q |
195 |
cccacaacccagaagacaagatattttaccattaagttagtctgtg |
240 |
Q |
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| T |
8447201 |
cccacaacccagaagacaagatattttaccattaagttagtctgtg |
8447246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 8447031 - 8447077
Alignment:
| Q |
25 |
atagggtgttacattctttatcaatttaaatgaatgtatgtcgtttt |
71 |
Q |
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| T |
8447031 |
ataggatggtacatactttatcaatttaaatgaatgtatgtcctttt |
8447077 |
T |
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