View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_high_148 (Length: 249)
Name: NF20665_high_148
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_high_148 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 44798662 - 44798435
Alignment:
| Q |
1 |
ttcttgcttgttctgtgaattggggcttagggtttgtaacctttttgaattggggcttagggattttgagaaatcatggaaatggaattaaacaaactct |
100 |
Q |
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| T |
44798662 |
ttcttgcttgttctgtgaattggggcttagggtttgtaacctttttgaattggggcttagggattttgagaaatcatggaaatggaattgaacaaactct |
44798563 |
T |
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| Q |
101 |
cagacttacttcaaaaaatggaacatcatccttcgtcttcgtcttcgtcttctgctgctcctaccacccccttggaaatagtcagcagatttcgtcttca |
200 |
Q |
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| T |
44798562 |
cagacttacttcaaaaaatggaacatcatccttcgtcttcgtcttcgtcttctgctgctcctaccacccccttggaaatagtcagcagatttcgtcttcg |
44798463 |
T |
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| Q |
201 |
tctattgagtcttcgtgctcgaaggtca |
228 |
Q |
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| T |
44798462 |
tctattgagtcttcgtgctcgaaggtca |
44798435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 99 - 228
Target Start/End: Original strand, 35161539 - 35161674
Alignment:
| Q |
99 |
ctcagacttacttcaaaaaatggaacatcatccttc------gtcttcgtcttcgtcttctgctgctcctaccacccccttggaaatagtcagcagattt |
192 |
Q |
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| T |
35161539 |
ctcagacttacttcaaaaaatggaacatcatccttcgtcttcgtcttcgtcttcgtcttctgctgctcctaccaccccctcggaaatagtcagcagattt |
35161638 |
T |
|
| Q |
193 |
cgtcttcatctattgagtcttcgtgctcgaaggtca |
228 |
Q |
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| T |
35161639 |
cgtcttcgtgtattgagtcttcgtgctcgaaggtca |
35161674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 79 - 228
Target Start/End: Original strand, 39839831 - 39839971
Alignment:
| Q |
79 |
gaaatggaattaaacaaactctcagacttacttcaaaaaatggaacatcatccttcgtcttcgtcttcgtcttctgctgctcctaccacccccttggaaa |
178 |
Q |
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||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||| || |||| || | ||||| |
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| T |
39839831 |
gaaatggaattgaacaaactctcagacgcacttcaaaaaatgcaacatcatccttcgtcttcgtcttc------tgctgatcttaccgcctc---ggaaa |
39839921 |
T |
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| Q |
179 |
tagtcagcagatttcgtcttcatctattgagtcttcgtgctcgaaggtca |
228 |
Q |
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| T |
39839922 |
tagtcagcagatttcgtcttcgtctattgagtcttcgtgctcgaaggtca |
39839971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 145
Target Start/End: Original strand, 39844740 - 39844804
Alignment:
| Q |
81 |
aatggaattaaacaaactctcagacttacttcaaaaaatggaacatcatccttcgtcttcgtctt |
145 |
Q |
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| T |
39844740 |
aatggaattgaacaaaccctcggtcgcacttcaaaaaatgcaacatcatccttcgtcttcgtctt |
39844804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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