View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_high_15 (Length: 569)
Name: NF20665_high_15
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 19 - 558
Target Start/End: Complemental strand, 5763268 - 5762738
Alignment:
| Q |
19 |
aagttgaatggcaataaacaagggtatttattcaaatactgactcattcattttcatatcaagattcatttttacacgtaaagtttaatttgatttgata |
118 |
Q |
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| T |
5763268 |
aagttgaatggcaataaacaagggtatttattcaaatactgactcattcattttcatatcaagattcatttttacacgtaaagtttaatttgatttgata |
5763169 |
T |
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| Q |
119 |
cacgaatgtnnnnnnnnnnnntcacctttccagtttccatagatatttttaaaattagcataacaaagtggcatacttcttttgacaaatttaattagcc |
218 |
Q |
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| T |
5763168 |
cacgaatgtaaaaagaaaaaatcacctttcca-------tagatattttaaaaattagcataacaaagtggcatacttcttttgacaaatttaattagcc |
5763076 |
T |
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| Q |
219 |
taagtcgnnnnnnnnnnnnnnntatgatttgacgattataattgattgacagccaaacaaattacactacgaatttattaacttattcatatattcaatt |
318 |
Q |
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| T |
5763075 |
taagtcaaaaaaaaaatta----atgatttgacgattataattgattgacagccaaacaaattacactacgaatttattaatttattcatatattcaatt |
5762980 |
T |
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| Q |
319 |
tatgaaaatcaaatgcataataagtattcaacttagtaattaagcaaaaacatcccgctg---------atcatgttagcgctaactgagnnnnnnnntg |
409 |
Q |
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| T |
5762979 |
tatgaaaattaaatgcataataagtattcaactta-------agcaaaggcatcccgctgcattatgtgatcatgtgagcgctaaccgagaaaaaaaatg |
5762887 |
T |
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| Q |
410 |
cataataagtaaaagactataaaatctataacattataacttttccaaacatattcaatctagaagagtttgttttgggaagtccatcctaaaaatgcag |
509 |
Q |
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| T |
5762886 |
cataataagtaaaagactataaaatctataacattataacttttccaaacatattcaatctagaagagtttgttttgggaagtccatcctaaaaatgtag |
5762787 |
T |
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| Q |
510 |
aattttattttttgggaacaaaacaaatgtagattgtttttatcttcat |
558 |
Q |
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| T |
5762786 |
aattttattttttgggaacaaaacaaatgtagattgtttttatcttcat |
5762738 |
T |
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