View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_high_160 (Length: 241)
Name: NF20665_high_160
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_high_160 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 20273425 - 20273592
Alignment:
| Q |
1 |
tgaagacaaaaaagaacacgagcatcctttgttttcaatgtaatcgataaaccttgtcctgaaagaatgagaagtgttggttcatgcatgagtcacaaag |
100 |
Q |
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| T |
20273425 |
tgaagacaaaaaagaacacgagcatccattgttttcaatgtaatcaataaaccttgtcctgaaagactgagaagtgttggttcatgcatgagtcacaaag |
20273524 |
T |
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| Q |
101 |
ccgataataaatatggagaagctgaaactcgataacatgaaggccaacctagtctaatacaaaaggag |
168 |
Q |
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| T |
20273525 |
ccgataataaatatggagaagctgaaacccgataacatgaaggccaacctagtctataacaaaaggag |
20273592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 4 - 122
Target Start/End: Original strand, 45892495 - 45892613
Alignment:
| Q |
4 |
agacaaaaaagaacacgagcatcctttgttttcaatgtaatcgataaaccttgtcctgaaagaatgagaagtgttggttcatgcatgagtcacaaagccg |
103 |
Q |
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| T |
45892495 |
agacataaaagaacatgagcatccattgttttcaatgtactcaataaaccttgtcctgaaagaatgagaagtgttggttcatgcctgagtcacatagccg |
45892594 |
T |
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| Q |
104 |
ataataaatatggagaagc |
122 |
Q |
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| T |
45892595 |
acaataaatatggagaagc |
45892613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 240
Target Start/End: Complemental strand, 12981355 - 12981242
Alignment:
| Q |
131 |
gataacatgaaggccaacctagtctaatacaaaaggagaaaatgctatgcatcagaaaaaccttc-aattcacagaatac---acagacccaaattaaaa |
226 |
Q |
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| T |
12981355 |
gataacaagaaggcaaacccagtctaaaacaaaaggagaaaatactaggcatcagaaaaaccatcaaattcacataatacagaacagacccagatgaaaa |
12981256 |
T |
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| Q |
227 |
aacataaagtataa |
240 |
Q |
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| T |
12981255 |
gacagaaagtataa |
12981242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 45892651 - 45892733
Alignment:
| Q |
130 |
cgataacatgaaggccaacctagtctaatacaaaaggagaaaatgctatgcatcag-aaaaaccttca-attcacagaataca |
210 |
Q |
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| T |
45892651 |
cgataacatgaaggccaacccagtctaaaacaaaaggagaaaatactaggaatcagaaaaaatcttcagattcacagaataca |
45892733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 12981479 - 12981394
Alignment:
| Q |
38 |
atgtaatcgataaaccttgtcctgaaagaatgagaagt-gttggttcatgcatgagtcacaaagccgataataaatatggagaagc |
122 |
Q |
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| T |
12981479 |
atgtactcaataaaccttgtcatgaaacaatgagaagtattttgttcatgcctgagtcatgaagccgacaataaatacggaaaagc |
12981394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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