View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20665_high_164 (Length: 240)

Name: NF20665_high_164
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20665_high_164
NF20665_high_164
[»] chr2 (4 HSPs)
chr2 (1-221)||(41957045-41957253)
chr2 (90-221)||(5598192-5598323)
chr2 (5-64)||(5598094-5598153)
chr2 (5-39)||(5597561-5597595)
[»] chr1 (2 HSPs)
chr1 (90-221)||(25548113-25548244)
chr1 (5-64)||(25548011-25548070)
[»] chr8 (3 HSPs)
chr8 (90-221)||(40636435-40636566)
chr8 (5-64)||(40636337-40636396)
chr8 (5-39)||(40635811-40635845)


Alignment Details
Target: chr2 (Bit Score: 164; Significance: 9e-88; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 41957045 - 41957253
Alignment:
Q  1 gcccgtaatcataatcaatgctttagaataagtaacaaacactaacaggagactagagagtaatgcgacacggatgagagagaccacgcaatccgaagtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||| |||||||||| |||||||    
T  41957045 gcccgtaatcataatcaatgctttagaataagtaacaaacactaacag------------taatgcgacacggatgagagaaaccacgcaatacgaagtt 41957132  T
Q  101 atatcagaaacaatcacaaagaaaatgagctagactcagcctcaagatatttgcaaatcctctccataacatctctactcttagcactattctgaagaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  41957133 atatcagaaacaatcacaaagaaaatgagctagactcagcctcatgatatttgcaaatcctctccataacatctctactcttagcactattatgaagaaa 41957232  T
Q  201 cctatcagcacacctctgctc 221  Q
    |||||||||||||||||||||    
T  41957233 cctatcagcacacctctgctc 41957253  T

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Target: chr2; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 90 - 221
Target Start/End: Original strand, 5598192 - 5598323
Alignment:
Q  90 aatccgaagttatatcagaaacaatcacaaagaaaatgagctagactcagcctcaagatatttgcaaatcctctccataacatctctactcttagcacta 189  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5598192 aatccaaagttatatcagaaacaatcacaaagaaaatgagctagactcagcctcaagatatttgcaaatcctctccataacatctctactcttagcacta 5598291  T
Q  190 ttctgaagaaacctatcagcacacctctgctc 221  Q
    || |||||||||||||||||||||||||||||    
T  5598292 ttttgaagaaacctatcagcacacctctgctc 5598323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 5598094 - 5598153
Alignment:
Q  5 gtaatcataatcaatgctttagaataagtaacaaacactaacaggagactagagagtaat 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5598094 gtaatcataatcaatgctttagaataagtaacaaacactaacaggagactagagagtaat 5598153  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 5597595 - 5597561
Alignment:
Q  5 gtaatcataatcaatgctttagaataagtaacaaa 39  Q
    |||||||||||||||||||||||||||||||||||    
T  5597595 gtaatcataatcaatgctttagaataagtaacaaa 5597561  T

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Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 90 - 221
Target Start/End: Original strand, 25548113 - 25548244
Alignment:
Q  90 aatccgaagttatatcagaaacaatcacaaagaaaatgagctagactcagcctcaagatatttgcaaatcctctccataacatctctactcttagcacta 189  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25548113 aatccaaagttatatcagaaacaatcacaaagaaaatgagctagactcagcctcaagatatttgcaaatcctctccataacatctctactcttagcacta 25548212  T
Q  190 ttctgaagaaacctatcagcacacctctgctc 221  Q
    ||||||||||||||||||||||||||||||||    
T  25548213 ttctgaagaaacctatcagcacacctctgctc 25548244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 25548011 - 25548070
Alignment:
Q  5 gtaatcataatcaatgctttagaataagtaacaaacactaacaggagactagagagtaat 64  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  25548011 gtaatcataatcaatgctttagaataagtaacaaacactaacaagagactagagagtaat 25548070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 124; Significance: 7e-64; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 90 - 221
Target Start/End: Original strand, 40636435 - 40636566
Alignment:
Q  90 aatccgaagttatatcagaaacaatcacaaagaaaatgagctagactcagcctcaagatatttgcaaatcctctccataacatctctactcttagcacta 189  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40636435 aatccgaagttatatcagaaacaatcataaagaaaatgagctagactcagcctcaagatatttgcaaatcctctccataacatctctactcttagcacta 40636534  T
Q  190 ttctgaagaaacctatcagcacacctctgctc 221  Q
    ||||||||||| ||||||||||||||||||||    
T  40636535 ttctgaagaaatctatcagcacacctctgctc 40636566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 40636337 - 40636396
Alignment:
Q  5 gtaatcataatcaatgctttagaataagtaacaaacactaacaggagactagagagtaat 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40636337 gtaatcataatcaatgctttagaataagtaacaaacactaacaggagactagagagtaat 40636396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 40635845 - 40635811
Alignment:
Q  5 gtaatcataatcaatgctttagaataagtaacaaa 39  Q
    |||||||||||||||||||||||||||||||||||    
T  40635845 gtaatcataatcaatgctttagaataagtaacaaa 40635811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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