View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_high_165 (Length: 240)
Name: NF20665_high_165
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_high_165 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 55173852 - 55174073
Alignment:
| Q |
1 |
tgccctgttgattttactaacatgaacagaatgtataagaaacttttgcaaggattggccatcnnnnnnngtaactaacgaaaacaacagaagtgcctgt |
100 |
Q |
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| T |
55173852 |
tgccctgttgattttactaacatgaacagaaagtataagaaacttttgcaaggattggccatctttttttgtaattaacgaaaacaacagaagtgcctgt |
55173951 |
T |
|
| Q |
101 |
ttaaacttgaaaacgtaacctttgcttttctaagtttcatatattatttgttccggactagaccaaggcctacccaaactggacatctgcaacacaagct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55173952 |
ttaaacttgaaaacgtaacctttgcttttctaagtttcatatattatttgttccggactagaccaaggcctacccaaactggacatctgcaacacaagct |
55174051 |
T |
|
| Q |
201 |
cggatccgaactgacgcgcctt |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
55174052 |
cggatccgaactgacgcgcctt |
55174073 |
T |
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