View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20665_high_166 (Length: 240)
Name: NF20665_high_166
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_high_166 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 123 - 232
Target Start/End: Complemental strand, 19144193 - 19144084
Alignment:
| Q |
123 |
tatgaataagtctgaaatggacattgtttgattgggtttgttgtattaatagtgatatgaaataaaatcatcaatggagttggtgctttcttcattttaa |
222 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19144193 |
tatgaataagtctaaaatggacattgtttgattgggtttgttgtattaatagtgatatgaaataaaatcatcaatggagttggtgctttcttcatcttaa |
19144094 |
T |
|
| Q |
223 |
atgatgatgt |
232 |
Q |
| |
|
||||| |||| |
|
|
| T |
19144093 |
atgattatgt |
19144084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 123 - 232
Target Start/End: Original strand, 19148800 - 19148909
Alignment:
| Q |
123 |
tatgaataagtctgaaatggacattgtttgattgggtttgttgtattaatagtgatatgaaataaaatcatcaatggagttggtgctttcttcattttaa |
222 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19148800 |
tatgaataagtctaaaatggacattgtttgattgggtttgttgtattaatagtgatatgaaataaaatcatcaatggagttggtgctttcttcatcttaa |
19148899 |
T |
|
| Q |
223 |
atgatgatgt |
232 |
Q |
| |
|
||||| |||| |
|
|
| T |
19148900 |
atgattatgt |
19148909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 19144316 - 19144244
Alignment:
| Q |
1 |
caagactgatgttagaaccattcaaaatttgaagaaaggttttacttcctagtaaggcttggtgatgggtgca |
73 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19144316 |
caagactgatgttaccaccatccaaaatttgaagaaaggttttacttcttagtaaggcttggtgatgggtgca |
19144244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 19148677 - 19148749
Alignment:
| Q |
1 |
caagactgatgttagaaccattcaaaatttgaagaaaggttttacttcctagtaaggcttggtgatgggtgca |
73 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19148677 |
caagactgatgttaccaccatccaaaatttgaagaaaggttttacttcttagtaaggcttggtgatgggtgca |
19148749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University