View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_high_171 (Length: 238)
Name: NF20665_high_171
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_high_171 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 11628573 - 11628345
Alignment:
| Q |
1 |
caataactatgccatttctaaggatggaaagaattctatagtatatatcagttcttccacccacggaaatacgtgaagataaatctgatgaatacagttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11628573 |
caataactatgccatttctaaggatggaaagaattctatagtatatatcagttcttccacccacggaaatacgtgaagataaatctgatgaatacagttt |
11628474 |
T |
|
| Q |
101 |
atccaactcctcatcaacaaacgaaacacgtagaaagttatccatatgttttttgtatttacgcagaacacgatttgagacattaatctctggaccacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11628473 |
atccaactcctcatcaacaaacgaaacacgtagaaagttatccatatgttttttgtatttacgcagaacacgatttgagacattaatctctggaccacaa |
11628374 |
T |
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| Q |
201 |
aagtatactttgcaaggtgttatctgtgc |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
11628373 |
aagtatactttgcaaggtgttatctgtgc |
11628345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 11685213 - 11685438
Alignment:
| Q |
1 |
caataactatgccatttctaaggatggaaagaattctatagtatatatcagttcttccacccacggaaatacgtgaagataaatctgatgaatacagttt |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| | ||||| |||| | | ||||| ||||||||||||||| |||||||||||| |
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| T |
11685213 |
caatatctatgccatttctaaggatggaaagaattctatagtatatcttagttcgcccactctcagaaatgtgtgaagataaatctgctgaatacagttt |
11685312 |
T |
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| Q |
101 |
atccaactcctcatcaacaaacgaaacacgtagaaagttatccatatgttttttgtatttacgcagaacacgatttgagacattaatctctggaccacaa |
200 |
Q |
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||||||| ||||||||||||| |||||||||||||||||||| |||||||| | | ||| ||||||||||| || ||||||||||||||||||||| |
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| T |
11685313 |
atccaacccctcatcaacaaaagaaacacgtagaaagttatcgatatgtttatgaaaacgacggagaacacgattagatacattaatctctggaccacaa |
11685412 |
T |
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| Q |
201 |
aagtatactttgcaaggtgttatctg |
226 |
Q |
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|||||||||||| ||||||||||||| |
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| T |
11685413 |
aagtatactttggaaggtgttatctg |
11685438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 11689225 - 11689450
Alignment:
| Q |
1 |
caataactatgccatttctaaggatggaaagaattctatagtatatatcagttcttccacccacggaaatacgtgaagataaatctgatgaatacagttt |
100 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||| | ||||| |||| | | ||||| ||||||||||||||| |||||||||||| |
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| T |
11689225 |
caatatctatgccatttctaaggatggaaagaattctatagtatatcttagttcgcccactctcagaaatgtgtgaagataaatctgctgaatacagttt |
11689324 |
T |
|
| Q |
101 |
atccaactcctcatcaacaaacgaaacacgtagaaagttatccatatgttttttgtatttacgcagaacacgatttgagacattaatctctggaccacaa |
200 |
Q |
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||||||| ||||||||||||| |||||||||||||||||||| |||||||| | | ||| ||||||||||| || ||||||||||||||||||||| |
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| T |
11689325 |
atccaacccctcatcaacaaaagaaacacgtagaaagttatcgatatgtttatgaaaacgacggagaacacgattagatacattaatctctggaccacaa |
11689424 |
T |
|
| Q |
201 |
aagtatactttgcaaggtgttatctg |
226 |
Q |
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|||||||||||| ||||||||||||| |
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| T |
11689425 |
aagtatactttggaaggtgttatctg |
11689450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 11637333 - 11637108
Alignment:
| Q |
1 |
caataactatgccatttctaaggatggaaagaattctatagtatatatcagttcttccacccacggaaatacgtgaagataaatctgatgaatacagttt |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||| | | |||||||||||||||||||| | ||| |||| || |
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| T |
11637333 |
caatatctatgccatttctaaggatggaaagaattctatagtatatctcagttctcccattctcagaaatacgtgaagataaatcggctgagtacatatt |
11637234 |
T |
|
| Q |
101 |
atccaactcctcatcaacaaacgaaacacgtagaaagttatccatatgttttttgtatttacgcagaacacgatttgagacattaatctctggaccacaa |
200 |
Q |
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|||||||||||| || ||||| |||||||||||||| ||||| ||||||| | | | | ||| ||||| |||||||||||||||||||||||||||||| |
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| T |
11637233 |
atccaactcctcgtcgacaaatgaaacacgtagaaaattatcaatatgttgatggaaatgacggagaacccgatttgagacattaatctctggaccacaa |
11637134 |
T |
|
| Q |
201 |
aagtatactttgcaaggtgttatctg |
226 |
Q |
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|||||||||||||| ||||||||||| |
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| T |
11637133 |
aagtatactttgcatggtgttatctg |
11637108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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