View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20665_high_172 (Length: 238)

Name: NF20665_high_172
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20665_high_172
NF20665_high_172
[»] chr7 (1 HSPs)
chr7 (65-172)||(18418094-18418202)
[»] chr5 (2 HSPs)
chr5 (65-172)||(21005913-21006019)
chr5 (171-208)||(21006039-21006076)
[»] chr4 (1 HSPs)
chr4 (65-172)||(50232698-50232804)
[»] chr3 (3 HSPs)
chr3 (171-208)||(50833435-50833472)
chr3 (171-208)||(50842381-50842418)
chr3 (171-208)||(32793061-32793098)
[»] scaffold0152 (1 HSPs)
scaffold0152 (1-34)||(10789-10822)
[»] chr1 (1 HSPs)
chr1 (171-208)||(24535235-24535272)


Alignment Details
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 65 - 172
Target Start/End: Original strand, 18418094 - 18418202
Alignment:
Q  65 ctcttgacattttttct-tcttgataatagacaattggttctgagaaataaaacaaccaggatgaaaccaagagacgcaaaaagatgcatgtatatatag 163  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18418094 ctcttgacattttttttctcttgataatagacaattggttctgagaaataaaacaaccaggatgaaaccaagagacacaaaaagatgcatgtatatatag 18418193  T
Q  164 gaaacaaac 172  Q
    |||||||||    
T  18418194 gaaacaaac 18418202  T

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Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 65 - 172
Target Start/End: Original strand, 21005913 - 21006019
Alignment:
Q  65 ctcttgacattttttcttcttgataatagacaattggttctgagaaataaaacaaccaggatgaaaccaagagacgcaaaaagatgcatgtatatatagg 164  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||  |||||| |||||||||||||||||    
T  21005913 ctcttgacatttttt-ttcttgataatagacaattggttatgagaaataaaacaaccaggatgaaaccaacagaaacaaaaacatgcatgtatatatagg 21006011  T
Q  165 aaacaaac 172  Q
    ||||||||    
T  21006012 aaacaaac 21006019  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 21006039 - 21006076
Alignment:
Q  171 acatgccttggaaatcgaaaagagaggttgagtggaga 208  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  21006039 acatgccttggaaatcgaaaagagaggctgagtggaga 21006076  T

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Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 65 - 172
Target Start/End: Original strand, 50232698 - 50232804
Alignment:
Q  65 ctcttgacattttttcttcttgataatagacaattggttctgagaaataaaacaaccaggatgaaaccaagagacgcaaaaagatgcatgtatatatagg 164  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||     
T  50232698 ctcttgacatttttt-ttcttgataatagacaattggttatgagaaataaaacaaccaggatgaaaccaagagaaacaaaaacatgcatgtatatataga 50232796  T
Q  165 aaacaaac 172  Q
    ||||||||    
T  50232797 aaacaaac 50232804  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 50833435 - 50833472
Alignment:
Q  171 acatgccttggaaatcgaaaagagaggttgagtggaga 208  Q
    ||||||||||||||||||||||||||||||||||||||    
T  50833435 acatgccttggaaatcgaaaagagaggttgagtggaga 50833472  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 50842418 - 50842381
Alignment:
Q  171 acatgccttggaaatcgaaaagagaggttgagtggaga 208  Q
    ||||||||||||||||||||||||||||||||||||||    
T  50842418 acatgccttggaaatcgaaaagagaggttgagtggaga 50842381  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 32793061 - 32793098
Alignment:
Q  171 acatgccttggaaatcgaaaagagaggttgagtggaga 208  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  32793061 acatgcattggaaatcgaaaagagaggctgagtggaga 32793098  T

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Target: scaffold0152 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 10822 - 10789
Alignment:
Q  1 caccctgaaagtgcaaagattcaacaaaaaatca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  10822 caccctgaaagtgcaaagattcaacaaaaaatca 10789  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 24535235 - 24535272
Alignment:
Q  171 acatgccttggaaatcgaaaagagaggttgagtggaga 208  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  24535235 acatgccttggaaatcgaaaagagaggctgagtggaga 24535272  T

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