View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_high_18 (Length: 534)
Name: NF20665_high_18
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 412; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 19 - 524
Target Start/End: Complemental strand, 33887595 - 33887098
Alignment:
| Q |
19 |
ctctttcctctggaatggtctccaacattattcggttggtcctgcgtttggttttctttgtcttgccaacagacatggtgctttctctcattgaaatcag |
118 |
Q |
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| T |
33887595 |
ctctttcctctggaatggtctccaacattattcggttggtcctgcgtttggttttcttggtcttgccaacagacatggtgctttctctcattgaaatcag |
33887496 |
T |
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| Q |
119 |
ttcatcaaaatcaaagttggtgattgtgaatgagtgaatatagccattggaatgggtcaatataatcaacagatctaagcatgtttgcaatgatttgttg |
218 |
Q |
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| T |
33887495 |
ttcatcaaaatcaaagttggtgattgtgaatgagggaatatagccattggaatgggtcaatataatcaacagatctaagcatgtttgcaatgatttgtgg |
33887396 |
T |
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| Q |
219 |
aatggatttagtcaaagtactaatgaaggtgtctctcaagtactggtaagttatggcctctatttataggtcacaaagatgattgttacacgcacattaa |
318 |
Q |
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| T |
33887395 |
aatggatttagtcaaagtacaaatgaaggtgtctctcaag---tggtaagttatggcctctatttataggtcacaaagatgatttttacacgcacattaa |
33887299 |
T |
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| Q |
319 |
tgacgtggatgagataagtttttatttagttcaaaatgactaattaaagaataaggatagagtcaattatcatattaactatttaaagataaataaattt |
418 |
Q |
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| T |
33887298 |
tgacgtggatgagataagtttttatttagttcaaaatgactaattaaagaataaggatagagtcaattatcatattaactatttaaag----ataaattt |
33887203 |
T |
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| Q |
419 |
ccacaaaataactagctgaaaaaacccgaataggataaggnnnnnnnnnctatatttagattacaaatttgtttataggtctatatcatcactactttga |
518 |
Q |
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| T |
33887202 |
tcacaaaataactagctgaaaaaacccgaataggataaggaaaaaaaat-tatatttagattacaaatttgtttataggtctatatcatcactactttga |
33887104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 33892611 - 33892517
Alignment:
| Q |
19 |
ctctttcctctggaatggtctccaacattattcggttggtcctgcgtttggttttctttgtcttgccaacagacatggtgctttctctcattgaa |
113 |
Q |
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|||||||||||||||||||||||||||| | || ||||| |||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
33892611 |
ctctttcctctggaatggtctccaacatcaacttgtatgtcctacgtttggttttctttgtcttgccaacagacatggtgctttctatctttgaa |
33892517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 336
Target Start/End: Complemental strand, 33892313 - 33892281
Alignment:
| Q |
304 |
ttacacgcacattaatgacgtggatgagataag |
336 |
Q |
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| T |
33892313 |
ttacacgcacattaattacgtggatgagataag |
33892281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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