View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_high_184 (Length: 236)
Name: NF20665_high_184
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_high_184 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 52784618 - 52784839
Alignment:
| Q |
15 |
aaaaatacggcaaaaatataaacaaaattaggaatgtcaaaatcaaagggattaggtaggtttatatgactttgaagttatagctcaaattcaaaatgca |
114 |
Q |
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| T |
52784618 |
aaaaatatggcaaaaatataaacaaaattaggaatgtcaaaatcaaagggattaggtaggtttatatgactttgaagttatagctcaaattcaaaatgca |
52784717 |
T |
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| Q |
115 |
gataaacttgcattttattattgtttacttgcaattgcaatctagacaagatatatacatgtacgatgaatttgtttgctaatgtgtgtccaacgaaagc |
214 |
Q |
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| T |
52784718 |
gataaacttgcattttattattgtttacttgcaattgcaagctagacaagatatatacatgtacaatgaatttgtttgctaatgtgtgtccaacgaaagc |
52784817 |
T |
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| Q |
215 |
aaatacattatattcataactc |
236 |
Q |
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| T |
52784818 |
aaatacattatattcataactc |
52784839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 52790882 - 52791103
Alignment:
| Q |
15 |
aaaaatacggcaaaaatataaacaaaattaggaatgtcaaaatcaaagggattaggtaggtttatatgactttgaagttatagctcaaattcaaaatgca |
114 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52790882 |
aaaaatatggcaaaaatataaacaaaattaggaatgtcaaaatcaaagggattaggtaggtttatatgactttgaagttatagctcaaattcaaaatgca |
52790981 |
T |
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| Q |
115 |
gataaacttgcattttattattgtttacttgcaattgcaatctagacaagatatatacatgtacgatgaatttgtttgctaatgtgtgtccaacgaaagc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
52790982 |
gataaacttgcattttattattgtttacttgcaattgcaagctagacaagatatatacatgtacaatgaatttgtttgctaatgtgtgtccaacgaaagc |
52791081 |
T |
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| Q |
215 |
aaatacattatattcataactc |
236 |
Q |
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| T |
52791082 |
aaatacattatattcataactc |
52791103 |
T |
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