View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_high_185 (Length: 236)
Name: NF20665_high_185
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_high_185 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 30730406 - 30730173
Alignment:
| Q |
1 |
tttatcatatagttgttccatgtgtactatatagggtattaatgttctgaaaacaacagaatataa------------atatgaactaaaattaaataat |
88 |
Q |
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|||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||| ||||||||| |||||||||||| |
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| T |
30730406 |
tttatcatatagttgttccatgtgtactatatagggcataaatgttctgaaaacaatagaatataataatgcaattatatatgaacttaaattaaataat |
30730307 |
T |
|
| Q |
89 |
agtacgtactacgtagatgcatggctgttaaattctattttataattaatgataatggtaatactatgtcgtatcttaatcggcttccaaatccatgtgt |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30730306 |
agtacgtactacgtagatgcatggctgttaaattctattttataattaatgataatggtaatactatgtcgtatcttaatcggcttccaaatccatgtgt |
30730207 |
T |
|
| Q |
189 |
gcaggaatattacataaacaaatactccataagt |
222 |
Q |
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|||||||||||| ||||||||||||||||||||| |
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| T |
30730206 |
gcaggaatattaaataaacaaatactccataagt |
30730173 |
T |
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